CogDL
0.4.1
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A
accuracy() (in module cogdl.utils.evaluator)
ACM_GTNDataset (class in cogdl.datasets.gtn_data)
ACM_HANDataset (class in cogdl.datasets.han_data)
add_args() (cogdl.data.Dataset static method)
(cogdl.models.base_model.BaseModel static method)
(cogdl.models.emb.deepwalk.DeepWalk static method)
(cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.dngr.DNGR static method)
(cogdl.models.emb.gatne.GATNE static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
(cogdl.models.emb.grarep.GraRep static method)
(cogdl.models.emb.hin2vec.Hin2vec static method)
(cogdl.models.emb.hope.HOPE static method)
(cogdl.models.emb.line.LINE static method)
(cogdl.models.emb.metapath2vec.Metapath2vec static method)
(cogdl.models.emb.netmf.NetMF static method)
(cogdl.models.emb.netsmf.NetSMF static method)
(cogdl.models.emb.node2vec.Node2vec static method)
(cogdl.models.emb.prone.ProNE static method)
(cogdl.models.emb.pronepp.ProNEPP static method)
(cogdl.models.emb.pte.PTE static method)
(cogdl.models.emb.sdne.SDNE static method)
(cogdl.models.emb.spectral.Spectral static method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN static method)
(cogdl.models.nn.deepergcn.DeeperGCN static method)
(cogdl.models.nn.dgi.DGIModel static method)
(cogdl.models.nn.dgl_gcc.GCC static method)
(cogdl.models.nn.dgl_jknet.JKNet static method)
(cogdl.models.nn.diffpool.DiffPool static method)
(cogdl.models.nn.disengcn.DisenGCN static method)
(cogdl.models.nn.drgat.DrGAT static method)
(cogdl.models.nn.drgcn.DrGCN static method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN static method)
(cogdl.models.nn.gat.GAT static method)
(cogdl.models.nn.gcn.TKipfGCN static method)
(cogdl.models.nn.gcnii.GCNII static method)
(cogdl.models.nn.gcnmix.GCNMix static method)
(cogdl.models.nn.gdc_gcn.GDC_GCN static method)
(cogdl.models.nn.gin.GIN static method)
(cogdl.models.nn.grace.GRACE static method)
(cogdl.models.nn.grand.Grand static method)
(cogdl.models.nn.graphsage.Graphsage static method)
(cogdl.models.nn.han.HAN static method)
(cogdl.models.nn.infograph.InfoGraph static method)
(cogdl.models.nn.mixhop.MixHop static method)
(cogdl.models.nn.mlp.MLP static method)
(cogdl.models.nn.mvgrl.MVGRL static method)
(cogdl.models.nn.patchy_san.PatchySAN static method)
(cogdl.models.nn.ppnp.PPNP static method)
(cogdl.models.nn.pprgo.PPRGo static method)
(cogdl.models.nn.pyg_cheb.Chebyshev static method)
(cogdl.models.nn.pyg_dgcnn.DGCNN static method)
(cogdl.models.nn.pyg_gcn.GCN static method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet static method)
(cogdl.models.nn.pyg_gtn.GTN static method)
(cogdl.models.nn.pyg_hgpsl.HGPSL static method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork static method)
(cogdl.models.nn.pyg_srgcn.SRGCN static method)
(cogdl.models.nn.rgcn.LinkPredictRGCN static method)
(cogdl.models.nn.sgc.sgc static method)
(cogdl.models.nn.sign.MLP static method)
(cogdl.models.nn.sortpool.SortPool static method)
(cogdl.models.nn.stpgnn.stpgnn static method)
(cogdl.models.nn.unsup_graphsage.SAGE static method)
(cogdl.tasks.attributed_graph_clustering.AttributedGraphClustering static method)
(cogdl.tasks.base_task.BaseTask static method)
(cogdl.tasks.graph_classification.GraphClassification static method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification static method)
(cogdl.tasks.link_prediction.LinkPrediction static method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction static method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification static method)
(cogdl.tasks.node_classification.NodeClassification static method)
(cogdl.tasks.pretrain.PretrainTask static method)
(cogdl.tasks.similarity_search.SimilaritySearch static method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification static method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification static method)
add_dataset_args() (in module cogdl.options)
add_model_args() (in module cogdl.options)
add_remaining_self_loops() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
add_reverse_edges() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
add_task_args() (in module cogdl.options)
add_trainer_args() (in module cogdl.options)
adj_pow_x() (cogdl.layers.mixhop_layer.MixHopLayer method)
Adjacency (class in cogdl.data)
after_pooling_forward() (cogdl.models.nn.diffpool.DiffPool method)
alias_draw() (in module cogdl.utils.utils)
alias_setup() (in module cogdl.utils.utils)
AmazonDataset (class in cogdl.datasets.gatne)
apply_to_device() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
ArgClass (class in cogdl.utils.utils)
AttentionLayer (class in cogdl.layers.han_layer)
AttributedGraphClustering (class in cogdl.tasks.attributed_graph_clustering)
augment() (cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.mvgrl.MVGRL method)
auto_experiment() (in module cogdl.experiments)
AutoML (class in cogdl.experiments)
B
BACEDataset (class in cogdl.datasets.strategies_data)
BaseModel (class in cogdl.models.base_model)
BaseTask (class in cogdl.tasks.base_task)
basis_forward() (cogdl.layers.rgcn_layer.RGCNLayer method)
Batch (class in cogdl.data)
batch_max_pooling() (in module cogdl.utils.utils)
batch_mean_pooling() (in module cogdl.utils.utils)
batch_sum_pooling() (in module cogdl.utils.utils)
BatchAE (class in cogdl.datasets.strategies_data)
batched_loss() (cogdl.models.nn.grace.GRACE method)
BatchMasking (class in cogdl.datasets.strategies_data)
BatchSubstructContext (class in cogdl.datasets.strategies_data)
BBBPDataset (class in cogdl.datasets.strategies_data)
bce_with_logits_loss() (in module cogdl.utils.evaluator)
bdd_forward() (cogdl.layers.rgcn_layer.RGCNLayer method)
BidirectionalOneShotIterator (class in cogdl.datasets.kg_data)
BioDataset (class in cogdl.datasets.strategies_data)
BlogcatalogDataset (class in cogdl.datasets.matlab_matrix)
BondEncoder (class in cogdl.layers.deepergcn_layer)
build_args_from_dict() (in module cogdl.utils.utils)
build_batch() (in module cogdl.datasets.strategies_data)
build_dataset() (in module cogdl.datasets)
build_dataset_from_name() (in module cogdl.datasets)
build_dataset_from_path() (in module cogdl.datasets)
build_model() (cogdl.models.nn.patchy_san.PatchySAN method)
(in module cogdl.models)
build_model_from_args() (cogdl.models.base_model.BaseModel class method)
(cogdl.models.emb.deepwalk.DeepWalk class method)
(cogdl.models.emb.dgk.DeepGraphKernel class method)
(cogdl.models.emb.dngr.DNGR class method)
(cogdl.models.emb.gatne.GATNE class method)
(cogdl.models.emb.graph2vec.Graph2Vec class method)
(cogdl.models.emb.grarep.GraRep class method)
(cogdl.models.emb.hin2vec.Hin2vec class method)
(cogdl.models.emb.hope.HOPE class method)
(cogdl.models.emb.line.LINE class method)
(cogdl.models.emb.metapath2vec.Metapath2vec class method)
(cogdl.models.emb.netmf.NetMF class method)
(cogdl.models.emb.netsmf.NetSMF class method)
(cogdl.models.emb.node2vec.Node2vec class method)
(cogdl.models.emb.prone.ProNE class method)
(cogdl.models.emb.pronepp.ProNEPP class method)
(cogdl.models.emb.pte.PTE class method)
(cogdl.models.emb.sdne.SDNE class method)
(cogdl.models.emb.spectral.Spectral class method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN class method)
(cogdl.models.nn.deepergcn.DeeperGCN class method)
(cogdl.models.nn.dgi.DGIModel class method)
(cogdl.models.nn.dgl_gcc.GCC class method)
(cogdl.models.nn.dgl_jknet.JKNet class method)
(cogdl.models.nn.diffpool.DiffPool class method)
(cogdl.models.nn.disengcn.DisenGCN class method)
(cogdl.models.nn.drgat.DrGAT class method)
(cogdl.models.nn.drgcn.DrGCN class method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN class method)
(cogdl.models.nn.gat.GAT class method)
(cogdl.models.nn.gcn.TKipfGCN class method)
(cogdl.models.nn.gcnii.GCNII class method)
(cogdl.models.nn.gcnmix.GCNMix class method)
(cogdl.models.nn.gdc_gcn.GDC_GCN class method)
(cogdl.models.nn.gin.GIN class method)
(cogdl.models.nn.grace.GRACE class method)
(cogdl.models.nn.grand.Grand class method)
(cogdl.models.nn.graphsage.Graphsage class method)
(cogdl.models.nn.han.HAN class method)
(cogdl.models.nn.infograph.InfoGraph class method)
(cogdl.models.nn.mixhop.MixHop class method)
(cogdl.models.nn.mlp.MLP class method)
(cogdl.models.nn.mvgrl.MVGRL class method)
(cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.ppnp.PPNP class method)
(cogdl.models.nn.pprgo.PPRGo class method)
(cogdl.models.nn.pyg_cheb.Chebyshev class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_gcn.GCN class method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN class method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet class method)
(cogdl.models.nn.pyg_gtn.GTN class method)
(cogdl.models.nn.pyg_hgpsl.HGPSL class method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork class method)
(cogdl.models.nn.pyg_srgcn.SRGCN class method)
(cogdl.models.nn.rgcn.LinkPredictRGCN class method)
(cogdl.models.nn.sgc.sgc class method)
(cogdl.models.nn.sign.MLP class method)
(cogdl.models.nn.sortpool.SortPool class method)
(cogdl.models.nn.stpgnn.stpgnn class method)
(cogdl.models.nn.unsup_graphsage.SAGE class method)
build_task() (in module cogdl.tasks)
build_up() (cogdl.utils.sampling.RandomWalker method)
C
cat() (in module cogdl.datasets.tu_data)
cat_dim() (cogdl.datasets.strategies_data.BatchAE method)
(cogdl.datasets.strategies_data.BatchSubstructContext method)
Chebyshev (class in cogdl.models.nn.pyg_cheb)
check_app() (in module cogdl.pipelines)
check_task_dataset_model_match() (in module cogdl.experiments)
ChemExtractSubstructureContextPair (class in cogdl.datasets.strategies_data)
clone() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
coalesce() (in module cogdl.datasets.tu_data)
cogdl.data (module)
cogdl.datasets (module)
cogdl.datasets.gatne (module)
cogdl.datasets.gcc_data (module)
cogdl.datasets.gtn_data (module)
cogdl.datasets.han_data (module)
cogdl.datasets.kg_data (module)
cogdl.datasets.matlab_matrix (module)
cogdl.datasets.ogb (module)
cogdl.datasets.strategies_data (module)
cogdl.datasets.tu_data (module)
cogdl.experiments (module)
cogdl.layers.deepergcn_layer (module)
cogdl.layers.disengcn_layer (module)
cogdl.layers.gat_layer (module)
cogdl.layers.gcn_layer (module)
cogdl.layers.gcnii_layer (module)
cogdl.layers.gin_layer (module)
cogdl.layers.han_layer (module)
cogdl.layers.mixhop_layer (module)
cogdl.layers.mlp_layer (module)
cogdl.layers.pprgo_layer (module)
cogdl.layers.rgcn_layer (module)
cogdl.layers.sage_layer (module)
cogdl.layers.saint_layer (module)
cogdl.layers.se_layer (module)
cogdl.layers.sgc_layer (module)
cogdl.models (module)
cogdl.models.base_model (module)
cogdl.models.supervised_model (module)
cogdl.options (module)
cogdl.pipelines (module)
cogdl.tasks (module)
cogdl.tasks.attributed_graph_clustering (module)
cogdl.tasks.base_task (module)
cogdl.tasks.graph_classification (module)
cogdl.tasks.heterogeneous_node_classification (module)
cogdl.tasks.link_prediction (module)
cogdl.tasks.multiplex_link_prediction (module)
cogdl.tasks.multiplex_node_classification (module)
cogdl.tasks.node_classification (module)
cogdl.tasks.pretrain (module)
cogdl.tasks.similarity_search (module)
cogdl.tasks.unsupervised_graph_classification (module)
cogdl.tasks.unsupervised_node_classification (module)
cogdl.utils.evaluator (module)
cogdl.utils.sampling (module)
cogdl.utils.utils (module)
col_indices (cogdl.data.Graph attribute)
col_norm() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
CollabDataset (class in cogdl.datasets.tu_data)
collate_fn() (cogdl.data.DataLoader static method)
(cogdl.datasets.kg_data.TestDataset static method)
(cogdl.datasets.kg_data.TrainDataset static method)
ComplEx (class in cogdl.models.emb.complex)
consis_loss() (cogdl.models.nn.grand.Grand method)
contrastive_loss() (cogdl.models.nn.grace.GRACE method)
convert() (in module cogdl.datasets.strategies_data)
convert_csr() (cogdl.data.Adjacency method)
count_frequency() (cogdl.datasets.kg_data.TrainDataset static method)
cross_entropy_loss() (in module cogdl.utils.evaluator)
csr_subgraph() (cogdl.data.Graph method)
cumsum() (cogdl.data.Batch method)
(cogdl.datasets.strategies_data.BatchMasking method)
(cogdl.datasets.strategies_data.BatchSubstructContext method)
cycle_index() (in module cogdl.utils.utils)
D
DataLoader (class in cogdl.data)
DataLoaderAE (class in cogdl.datasets.strategies_data)
DataLoaderSubstructContext (class in cogdl.datasets.strategies_data)
Dataset (class in cogdl.data)
DatasetPipeline (class in cogdl.pipelines)
DatasetStatsPipeline (class in cogdl.pipelines)
DatasetVisualPipeline (class in cogdl.pipelines)
DBLP_GTNDataset (class in cogdl.datasets.gtn_data)
DBLP_HANDataset (class in cogdl.datasets.han_data)
DblpNEDataset (class in cogdl.datasets.matlab_matrix)
DeeperGCN (class in cogdl.models.nn.deepergcn)
DeepGraphKernel (class in cogdl.models.emb.dgk)
DeepWalk (class in cogdl.models.emb.deepwalk)
degrees (cogdl.data.Adjacency attribute)
degrees() (cogdl.data.Graph method)
device (cogdl.data.Adjacency attribute)
DGCNN (class in cogdl.models.nn.pyg_dgcnn)
DGIModel (class in cogdl.models.nn.dgi)
DiffPool (class in cogdl.models.nn.diffpool)
DisenGCN (class in cogdl.models.nn.disengcn)
DisenGCNLayer (class in cogdl.layers.disengcn_layer)
DistMult (class in cogdl.models.emb.distmult)
divide_data() (in module cogdl.tasks.link_prediction)
DNGR (class in cogdl.models.emb.dngr)
download() (cogdl.data.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.strategies_data.BACEDataset method)
(cogdl.datasets.strategies_data.BBBPDataset method)
(cogdl.datasets.strategies_data.BioDataset method)
(cogdl.datasets.strategies_data.MoleculeDataset method)
(cogdl.datasets.tu_data.TUDataset method)
download_url() (in module cogdl.utils.utils)
DrGAT (class in cogdl.models.nn.drgat)
DrGCN (class in cogdl.models.nn.drgcn)
drop_adj() (cogdl.models.nn.grace.GRACE method)
drop_feature() (cogdl.models.nn.grace.GRACE method)
DropEdge_GCN (class in cogdl.models.nn.dropedge_gcn)
dropNode() (cogdl.models.nn.grand.Grand method)
E
edge_attr (cogdl.data.Graph attribute)
edge_attr_size (cogdl.data.Dataset attribute)
(cogdl.datasets.ogb.OGBProteinsDataset attribute)
edge_index (cogdl.data.Adjacency attribute)
(cogdl.data.Graph attribute)
edge_subgraph() (cogdl.data.Graph method)
edge_types (cogdl.data.Graph attribute)
edge_weight (cogdl.data.Graph attribute)
EdgeEncoder (class in cogdl.layers.deepergcn_layer)
Edgelist (class in cogdl.datasets.gcc_data)
embed() (cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
enhance_emb() (cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
ENZYMES (class in cogdl.datasets.tu_data)
eval() (cogdl.data.Graph method)
evaluate() (cogdl.models.nn.han.HAN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
experiment() (in module cogdl.experiments)
ExtractSubstructureContextPair (class in cogdl.datasets.strategies_data)
F
FB13Datset (class in cogdl.datasets.kg_data)
FB13SDatset (class in cogdl.datasets.kg_data)
FB15k237Datset (class in cogdl.datasets.kg_data)
FB15kDatset (class in cogdl.datasets.kg_data)
feature_extractor() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
FlickrDataset (class in cogdl.datasets.matlab_matrix)
forward() (cogdl.layers.deepergcn_layer.BondEncoder method)
(cogdl.layers.deepergcn_layer.EdgeEncoder method)
(cogdl.layers.deepergcn_layer.GENConv method)
(cogdl.layers.deepergcn_layer.ResGNNLayer method)
(cogdl.layers.disengcn_layer.DisenGCNLayer method)
(cogdl.layers.gat_layer.GATLayer method)
(cogdl.layers.gcn_layer.GCNLayer method)
(cogdl.layers.gcnii_layer.GCNIILayer method)
(cogdl.layers.gin_layer.GINLayer method)
(cogdl.layers.han_layer.AttentionLayer method)
(cogdl.layers.han_layer.HANLayer method)
(cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.mlp_layer.MLP method)
(cogdl.layers.pprgo_layer.LinearLayer method)
(cogdl.layers.pprgo_layer.PPRGoLayer method)
(cogdl.layers.rgcn_layer.RGCNLayer method)
(cogdl.layers.sage_layer.SAGELayer method)
(cogdl.layers.saint_layer.SAINTLayer method)
(cogdl.layers.se_layer.SELayer method)
(cogdl.layers.sgc_layer.SGCLayer method)
(cogdl.models.base_model.BaseModel method)
(cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.deepergcn.DeeperGCN method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.diffpool.DiffPool method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.drgat.DrGAT method)
(cogdl.models.nn.drgcn.DrGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.gat.GAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.gin.GIN method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.han.HAN method)
(cogdl.models.nn.infograph.InfoGraph method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.patchy_san.PatchySAN method)
(cogdl.models.nn.ppnp.PPNP method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_dgcnn.DGCNN method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.pyg_hgpsl.HGPSL method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.sgc.sgc method)
(cogdl.models.nn.sign.MLP method)
(cogdl.models.nn.sortpool.SortPool method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
forward_ema() (cogdl.models.nn.gcnmix.GCNMix method)
from_data_list() (cogdl.data.Batch static method)
(cogdl.data.MultiGraphDataset static method)
(cogdl.datasets.strategies_data.BatchAE static method)
(cogdl.datasets.strategies_data.BatchMasking static method)
(cogdl.datasets.strategies_data.BatchSubstructContext static method)
from_dict() (cogdl.data.Adjacency static method)
(cogdl.data.Graph static method)
from_pyg_data() (cogdl.data.Graph static method)
G
GAT (class in cogdl.models.nn.gat)
GATLayer (class in cogdl.layers.gat_layer)
GATNE (class in cogdl.models.emb.gatne)
GatneDataset (class in cogdl.datasets.gatne)
GCC (class in cogdl.models.nn.dgl_gcc)
GCCDataset (class in cogdl.datasets.gcc_data)
GCN (class in cogdl.models.nn.pyg_gcn)
GCNII (class in cogdl.models.nn.gcnii)
GCNIILayer (class in cogdl.layers.gcnii_layer)
GCNLayer (class in cogdl.layers.gcn_layer)
GCNMix (class in cogdl.models.nn.gcnmix)
GDC_GCN (class in cogdl.models.nn.gdc_gcn)
gen_node_pairs() (in module cogdl.tasks.link_prediction)
gen_variants() (in module cogdl.experiments)
GENConv (class in cogdl.layers.deepergcn_layer)
generate_normalization() (cogdl.data.Adjacency method)
GenerateEmbeddingPipeline (class in cogdl.pipelines)
get() (cogdl.data.Dataset method)
(cogdl.data.MultiGraphDataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.ogb.MAGDataset method)
(cogdl.datasets.ogb.OGBGDataset method)
(cogdl.datasets.ogb.OGBNDataset method)
get_activation() (in module cogdl.utils.utils)
get_default_args() (in module cogdl.options)
get_denoised_matrix() (cogdl.models.emb.dngr.DNGR method)
get_display_data_parser() (in module cogdl.options)
get_download_data_parser() (in module cogdl.options)
get_emb() (cogdl.models.emb.dngr.DNGR method)
get_embeddings() (cogdl.models.nn.pyg_gcn.GCN method)
get_evaluator() (cogdl.data.Dataset method)
(cogdl.datasets.ogb.MAGDataset method)
(cogdl.datasets.ogb.OGBArxivDataset method)
(cogdl.datasets.ogb.OGBNDataset method)
(cogdl.datasets.ogb.OGBProteinsDataset method)
get_link_labels() (cogdl.tasks.link_prediction.GNNHomoLinkPrediction static method)
get_loader() (cogdl.datasets.ogb.OGBGDataset method)
get_loss_fn() (cogdl.data.Dataset method)
(cogdl.datasets.ogb.OGBNDataset method)
(cogdl.datasets.ogb.OGBProteinsDataset method)
get_memory_usage() (in module cogdl.utils.utils)
get_norm_layer() (in module cogdl.utils.utils)
get_optimizer() (cogdl.models.nn.gcnii.GCNII method)
get_parser() (in module cogdl.options)
get_ppmi_matrix() (cogdl.models.emb.dngr.DNGR method)
get_score() (in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
get_subset() (cogdl.datasets.ogb.OGBGDataset method)
get_task_model_args() (in module cogdl.options)
get_trainer() (cogdl.models.base_model.BaseModel static method)
(cogdl.models.nn.dgi.DGIModel static method)
(cogdl.models.nn.dgl_jknet.JKNet static method)
(cogdl.models.nn.grace.GRACE static method)
(cogdl.models.nn.graphsage.Graphsage static method)
(cogdl.models.nn.mvgrl.MVGRL static method)
(cogdl.models.nn.pprgo.PPRGo static method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.nn.unsup_graphsage.SAGE static method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel static method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel static method)
(cogdl.tasks.base_task.BaseTask method)
get_training_parser() (in module cogdl.options)
get_true_head_and_tail() (cogdl.datasets.kg_data.TrainDataset static method)
get_weight() (cogdl.data.Adjacency method)
GIN (class in cogdl.models.nn.gin)
GINLayer (class in cogdl.layers.gin_layer)
GNNHomoLinkPrediction (class in cogdl.tasks.link_prediction)
GPT_GNN (class in cogdl.models.nn.pyg_gpt_gnn)
GRACE (class in cogdl.models.nn.grace)
Grand (class in cogdl.models.nn.grand)
Graph (class in cogdl.data)
Graph2Vec (class in cogdl.models.emb.graph2vec)
graph_classification_loss() (cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.infograph.InfoGraph method)
graph_classificatoin_loss() (cogdl.models.nn.diffpool.DiffPool method)
graph_data_obj_to_nx() (in module cogdl.datasets.strategies_data)
graph_data_obj_to_nx_simple() (in module cogdl.datasets.strategies_data)
GraphClassification (class in cogdl.tasks.graph_classification)
Graphsage (class in cogdl.models.nn.graphsage)
GraphUnet (class in cogdl.models.nn.pyg_graph_unet)
GraRep (class in cogdl.models.emb.grarep)
GTN (class in cogdl.models.nn.pyg_gtn)
GTNDataset (class in cogdl.datasets.gtn_data)
H
HAN (class in cogdl.models.nn.han)
HANDataset (class in cogdl.datasets.han_data)
HANLayer (class in cogdl.layers.han_layer)
HeterogeneousNodeClassification (class in cogdl.tasks.heterogeneous_node_classification)
HGPSL (class in cogdl.models.nn.pyg_hgpsl)
Hin2vec (class in cogdl.models.emb.hin2vec)
HomoLinkPrediction (class in cogdl.tasks.link_prediction)
HOPE (class in cogdl.models.emb.hope)
I
identity_act() (in module cogdl.utils.utils)
IMDB_GTNDataset (class in cogdl.datasets.gtn_data)
IMDB_HANDataset (class in cogdl.datasets.han_data)
ImdbBinaryDataset (class in cogdl.datasets.tu_data)
ImdbMultiDataset (class in cogdl.datasets.tu_data)
in_norm (cogdl.data.Graph attribute)
inference() (cogdl.models.nn.graphsage.Graphsage method)
(cogdl.tasks.node_classification.NodeClassification method)
InfoGraph (class in cogdl.models.nn.infograph)
is_inductive() (cogdl.data.Graph method)
is_symmetric() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
J
JKNet (class in cogdl.models.nn.dgl_jknet)
K
KDD_ICDM_GCCDataset (class in cogdl.datasets.gcc_data)
keys (cogdl.data.Adjacency attribute)
(cogdl.data.Graph attribute)
KGLinkPrediction (class in cogdl.tasks.link_prediction)
KnowledgeGraphDataset (class in cogdl.datasets.kg_data)
L
len() (cogdl.data.MultiGraphDataset method)
LINE (class in cogdl.models.emb.line)
LinearLayer (class in cogdl.layers.pprgo_layer)
LinkPredictCompGCN (class in cogdl.models.nn.compgcn)
LinkPrediction (class in cogdl.tasks.link_prediction)
LinkPredictRGCN (class in cogdl.models.nn.rgcn)
load_from_pretrained() (cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.link_prediction.LinkPrediction method)
LoadFrom (class in cogdl.tasks.base_task)
local_graph() (cogdl.data.Graph method)
log_metrics() (in module cogdl.tasks.link_prediction)
loss() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.han.HAN method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedModel method)
M
MAGDataset (class in cogdl.datasets.ogb)
makedirs() (in module cogdl.utils.utils)
mask2nid() (cogdl.data.Graph method)
MatlabMatrix (class in cogdl.datasets.matlab_matrix)
MeanAggregator (class in cogdl.layers.sage_layer)
message_norm() (cogdl.layers.deepergcn_layer.GENConv method)
Metapath2vec (class in cogdl.models.emb.metapath2vec)
mi_loss() (cogdl.models.nn.infograph.InfoGraph static method)
mini_forward() (cogdl.models.nn.graphsage.Graphsage method)
mini_loss() (cogdl.models.nn.graphsage.Graphsage method)
MixHop (class in cogdl.models.nn.mixhop)
MixHopLayer (class in cogdl.layers.mixhop_layer)
MLP (class in cogdl.layers.mlp_layer)
(class in cogdl.models.nn.mlp)
(class in cogdl.models.nn.sign)
model_name (cogdl.models.emb.complex.ComplEx attribute)
(cogdl.models.emb.deepwalk.DeepWalk attribute)
(cogdl.models.emb.dgk.DeepGraphKernel attribute)
(cogdl.models.emb.distmult.DistMult attribute)
(cogdl.models.emb.dngr.DNGR attribute)
(cogdl.models.emb.gatne.GATNE attribute)
(cogdl.models.emb.graph2vec.Graph2Vec attribute)
(cogdl.models.emb.grarep.GraRep attribute)
(cogdl.models.emb.hin2vec.Hin2vec attribute)
(cogdl.models.emb.hope.HOPE attribute)
(cogdl.models.emb.line.LINE attribute)
(cogdl.models.emb.metapath2vec.Metapath2vec attribute)
(cogdl.models.emb.netmf.NetMF attribute)
(cogdl.models.emb.netsmf.NetSMF attribute)
(cogdl.models.emb.node2vec.Node2vec attribute)
(cogdl.models.emb.prone.ProNE attribute)
(cogdl.models.emb.pronepp.ProNEPP attribute)
(cogdl.models.emb.pte.PTE attribute)
(cogdl.models.emb.rotate.RotatE attribute)
(cogdl.models.emb.sdne.SDNE attribute)
(cogdl.models.emb.spectral.Spectral attribute)
(cogdl.models.emb.transe.TransE attribute)
(cogdl.models.nn.compgcn.LinkPredictCompGCN attribute)
(cogdl.models.nn.deepergcn.DeeperGCN attribute)
(cogdl.models.nn.dgi.DGIModel attribute)
(cogdl.models.nn.dgl_gcc.GCC attribute)
(cogdl.models.nn.dgl_jknet.JKNet attribute)
(cogdl.models.nn.diffpool.DiffPool attribute)
(cogdl.models.nn.disengcn.DisenGCN attribute)
(cogdl.models.nn.drgat.DrGAT attribute)
(cogdl.models.nn.drgcn.DrGCN attribute)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN attribute)
(cogdl.models.nn.gat.GAT attribute)
(cogdl.models.nn.gcn.TKipfGCN attribute)
(cogdl.models.nn.gcnii.GCNII attribute)
(cogdl.models.nn.gcnmix.GCNMix attribute)
(cogdl.models.nn.gdc_gcn.GDC_GCN attribute)
(cogdl.models.nn.gin.GIN attribute)
(cogdl.models.nn.grace.GRACE attribute)
(cogdl.models.nn.grand.Grand attribute)
(cogdl.models.nn.graphsage.Graphsage attribute)
(cogdl.models.nn.han.HAN attribute)
(cogdl.models.nn.infograph.InfoGraph attribute)
(cogdl.models.nn.mixhop.MixHop attribute)
(cogdl.models.nn.mlp.MLP attribute)
(cogdl.models.nn.mvgrl.MVGRL attribute)
(cogdl.models.nn.patchy_san.PatchySAN attribute)
(cogdl.models.nn.ppnp.PPNP attribute)
(cogdl.models.nn.pprgo.PPRGo attribute)
(cogdl.models.nn.pyg_cheb.Chebyshev attribute)
(cogdl.models.nn.pyg_dgcnn.DGCNN attribute)
(cogdl.models.nn.pyg_gcn.GCN attribute)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN attribute)
(cogdl.models.nn.pyg_graph_unet.GraphUnet attribute)
(cogdl.models.nn.pyg_gtn.GTN attribute)
(cogdl.models.nn.pyg_hgpsl.HGPSL attribute)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork attribute)
(cogdl.models.nn.pyg_srgcn.SRGCN attribute)
(cogdl.models.nn.rgcn.LinkPredictRGCN attribute)
(cogdl.models.nn.sgc.sgc attribute)
(cogdl.models.nn.sign.MLP attribute)
(cogdl.models.nn.sortpool.SortPool attribute)
(cogdl.models.nn.stpgnn.stpgnn attribute)
(cogdl.models.nn.unsup_graphsage.SAGE attribute)
MoleculeDataset (class in cogdl.datasets.strategies_data)
multiclass_f1() (in module cogdl.utils.evaluator)
MultiGraphDataset (class in cogdl.data)
multilabel_f1() (in module cogdl.utils.evaluator)
MultiplexLinkPrediction (class in cogdl.tasks.multiplex_link_prediction)
MultiplexNodeClassification (class in cogdl.tasks.multiplex_node_classification)
MUTAGDataset (class in cogdl.datasets.tu_data)
MVGRL (class in cogdl.models.nn.mvgrl)
N
NCT109Dataset (class in cogdl.datasets.tu_data)
NCT1Dataset (class in cogdl.datasets.tu_data)
NegativeEdge (class in cogdl.datasets.strategies_data)
NetMF (class in cogdl.models.emb.netmf)
NetSMF (class in cogdl.models.emb.netsmf)
NetworkEmbeddingCMTYDataset (class in cogdl.datasets.matlab_matrix)
Node2vec (class in cogdl.models.emb.node2vec)
node_classification_loss() (cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
node_degree_as_feature() (in module cogdl.tasks.graph_classification)
NodeClassification (class in cogdl.tasks.node_classification)
norm() (cogdl.models.nn.pyg_gtn.GTN method)
normalization() (cogdl.models.nn.pyg_gtn.GTN method)
normalize() (cogdl.data.Graph method)
normalize_adj() (cogdl.data.Adjacency method)
normalize_feature() (in module cogdl.datasets.tu_data)
normalize_x() (cogdl.models.nn.grand.Grand method)
num_authors (cogdl.datasets.ogb.MAGDataset attribute)
num_classes (cogdl.data.Dataset attribute)
(cogdl.data.Graph attribute)
(cogdl.data.MultiGraphDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.ogb.OGBGDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
num_edge_attributes() (in module cogdl.datasets.tu_data)
num_edge_labels() (in module cogdl.datasets.tu_data)
num_edge_types (cogdl.datasets.ogb.MAGDataset attribute)
num_edges (cogdl.data.Adjacency attribute)
(cogdl.data.Graph attribute)
num_entities (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
num_features (cogdl.data.Dataset attribute)
(cogdl.data.Graph attribute)
(cogdl.data.MultiGraphDataset attribute)
num_field_of_study (cogdl.datasets.ogb.MAGDataset attribute)
num_graphs (cogdl.data.Batch attribute)
(cogdl.datasets.strategies_data.BatchAE attribute)
(cogdl.datasets.strategies_data.BatchMasking attribute)
(cogdl.datasets.strategies_data.BatchSubstructContext attribute)
num_institutions (cogdl.datasets.ogb.MAGDataset attribute)
num_node_attributes() (in module cogdl.datasets.tu_data)
num_node_labels() (in module cogdl.datasets.tu_data)
num_node_types (cogdl.datasets.ogb.MAGDataset attribute)
num_nodes (cogdl.data.Adjacency attribute)
(cogdl.data.Graph attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
num_papers (cogdl.datasets.ogb.MAGDataset attribute)
num_relations (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
nx_to_graph_data_obj() (in module cogdl.datasets.strategies_data)
nx_to_graph_data_obj_simple() (in module cogdl.datasets.strategies_data)
O
OAGBertInferencePipepline (class in cogdl.pipelines)
OGBArxivDataset (class in cogdl.datasets.ogb)
OGBCodeDataset (class in cogdl.datasets.ogb)
OGBGDataset (class in cogdl.datasets.ogb)
OGBMolbaceDataset (class in cogdl.datasets.ogb)
OGBMolhivDataset (class in cogdl.datasets.ogb)
OGBMolpcbaDataset (class in cogdl.datasets.ogb)
OGBNDataset (class in cogdl.datasets.ogb)
OGBPapers100MDataset (class in cogdl.datasets.ogb)
OGBPpaDataset (class in cogdl.datasets.ogb)
OGBProductsDataset (class in cogdl.datasets.ogb)
OGBProteinsDataset (class in cogdl.datasets.ogb)
one_shot_iterator() (cogdl.datasets.kg_data.BidirectionalOneShotIterator static method)
out_norm (cogdl.data.Graph attribute)
output_results() (in module cogdl.experiments)
P
parse_args_and_arch() (in module cogdl.options)
parse_txt_array() (in module cogdl.datasets.tu_data)
PatchySAN (class in cogdl.models.nn.patchy_san)
Pipeline (class in cogdl.pipelines)
pipeline() (in module cogdl.pipelines)
PPIDataset (class in cogdl.datasets.matlab_matrix)
PPNP (class in cogdl.models.nn.ppnp)
PPRGo (class in cogdl.models.nn.pprgo)
PPRGoLayer (class in cogdl.layers.pprgo_layer)
predict() (cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.deepergcn.DeeperGCN method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.drgcn.DrGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.gat.GAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.ppnp.PPNP method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.sgc.sgc method)
(cogdl.models.nn.sign.MLP method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.tasks.unsupervised_node_classification.TopKRanker method)
preprocess() (cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.tasks.node_classification.NodeClassification method)
preprocessing() (cogdl.models.nn.gdc_gcn.GDC_GCN method)
PretrainTask (class in cogdl.tasks.pretrain)
print_result() (in module cogdl.utils.utils)
process() (cogdl.data.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.ogb.MAGDataset method)
(cogdl.datasets.ogb.OGBNDataset method)
(cogdl.datasets.ogb.OGBProteinsDataset method)
(cogdl.datasets.strategies_data.BACEDataset method)
(cogdl.datasets.strategies_data.BBBPDataset method)
(cogdl.datasets.strategies_data.BioDataset method)
(cogdl.datasets.strategies_data.MoleculeDataset method)
(cogdl.datasets.tu_data.TUDataset method)
processed_file_names (cogdl.data.Dataset attribute)
(cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.ogb.MAGDataset attribute)
(cogdl.datasets.ogb.OGBNDataset attribute)
(cogdl.datasets.strategies_data.BACEDataset attribute)
(cogdl.datasets.strategies_data.BBBPDataset attribute)
(cogdl.datasets.strategies_data.BioDataset attribute)
(cogdl.datasets.strategies_data.MoleculeDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
processed_paths (cogdl.data.Dataset attribute)
ProNE (class in cogdl.models.emb.prone)
ProNEPP (class in cogdl.models.emb.pronepp)
prop() (cogdl.models.nn.grace.GRACE method)
ProtainsDataset (class in cogdl.datasets.tu_data)
PTCMRDataset (class in cogdl.datasets.tu_data)
PTE (class in cogdl.models.emb.pte)
R
rand_prop() (cogdl.models.nn.grand.Grand method)
random_surfing() (cogdl.models.emb.dngr.DNGR method)
random_walk (in module cogdl.utils.sampling)
random_walk() (cogdl.data.Adjacency method)
random_walk_with_restart() (cogdl.data.Adjacency method)
randomly_choose_false_edges() (in module cogdl.tasks.link_prediction)
RandomWalker (class in cogdl.utils.sampling)
raw_edge_weight (cogdl.data.Graph attribute)
raw_experiment() (in module cogdl.experiments)
raw_file_names (cogdl.data.Dataset attribute)
(cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.strategies_data.BACEDataset attribute)
(cogdl.datasets.strategies_data.BBBPDataset attribute)
(cogdl.datasets.strategies_data.BioDataset attribute)
(cogdl.datasets.strategies_data.MoleculeDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
raw_paths (cogdl.data.Dataset attribute)
read_file() (in module cogdl.datasets.tu_data)
read_gatne_data() (in module cogdl.datasets.gatne)
read_gtn_data() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
read_triplet_data() (in module cogdl.datasets.kg_data)
read_tu_data() (in module cogdl.datasets.tu_data)
read_txt_array() (in module cogdl.datasets.tu_data)
RecommendationPipepline (class in cogdl.pipelines)
RedditBinary (class in cogdl.datasets.tu_data)
RedditMulti12K (class in cogdl.datasets.tu_data)
RedditMulti5K (class in cogdl.datasets.tu_data)
register_dataset() (in module cogdl.datasets)
register_model() (in module cogdl.models)
register_task() (in module cogdl.tasks)
remove_self_loops() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
reset_data() (cogdl.models.nn.gdc_gcn.GDC_GCN method)
reset_idxes() (in module cogdl.datasets.strategies_data)
reset_parameters() (cogdl.layers.disengcn_layer.DisenGCNLayer method)
(cogdl.layers.gat_layer.GATLayer method)
(cogdl.layers.gcn_layer.GCNLayer method)
(cogdl.layers.gcnii_layer.GCNIILayer method)
(cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.mlp_layer.MLP method)
(cogdl.layers.pprgo_layer.LinearLayer method)
(cogdl.layers.rgcn_layer.RGCNLayer method)
(cogdl.models.nn.diffpool.DiffPool method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.infograph.InfoGraph method)
ResGNNLayer (class in cogdl.layers.deepergcn_layer)
RGCNLayer (class in cogdl.layers.rgcn_layer)
RotatE (class in cogdl.models.emb.rotate)
row_indptr (cogdl.data.Adjacency attribute)
(cogdl.data.Graph attribute)
row_norm() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
run() (cogdl.experiments.AutoML method)
S
SAGE (class in cogdl.models.nn.unsup_graphsage)
SAGELayer (class in cogdl.layers.sage_layer)
SAGPoolNetwork (class in cogdl.models.nn.pyg_sagpool)
SAINTLayer (class in cogdl.layers.saint_layer)
sample_adj() (cogdl.data.Graph method)
sample_mask() (in module cogdl.datasets.han_data)
sampling() (cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
save_checkpoint() (cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.link_prediction.LinkPrediction method)
save_emb() (cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
save_embedding() (cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
save_model() (in module cogdl.tasks.link_prediction)
scale_matrix() (cogdl.models.emb.dngr.DNGR method)
score() (cogdl.models.emb.complex.ComplEx method)
(cogdl.models.emb.distmult.DistMult method)
(cogdl.models.emb.rotate.RotatE method)
(cogdl.models.emb.transe.TransE method)
SDNE (class in cogdl.models.emb.sdne)
segment() (in module cogdl.datasets.tu_data)
SELayer (class in cogdl.layers.se_layer)
select_task() (in module cogdl.tasks.link_prediction)
self_supervised_loss() (cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
set_asymmetric() (cogdl.data.Graph method)
set_best_config() (in module cogdl.experiments)
set_data_device() (cogdl.models.nn.graphsage.Graphsage method)
set_device() (cogdl.models.base_model.BaseModel method)
set_evaluator() (cogdl.tasks.base_task.BaseTask method)
set_graph() (cogdl.models.nn.dgl_jknet.JKNet method)
set_logger() (in module cogdl.tasks.link_prediction)
set_loss_fn() (cogdl.models.base_model.BaseModel method)
(cogdl.tasks.base_task.BaseTask method)
set_random_seed() (in module cogdl.utils.utils)
set_symmetric() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
set_weight() (cogdl.data.Adjacency method)
sgc (class in cogdl.models.nn.sgc)
SGCLayer (class in cogdl.layers.sgc_layer)
SIGIR_CIKM_GCCDataset (class in cogdl.datasets.gcc_data)
SIGMOD_ICDE_GCCDataset (class in cogdl.datasets.gcc_data)
SimilaritySearch (class in cogdl.tasks.similarity_search)
SortPool (class in cogdl.models.nn.sortpool)
Spectral (class in cogdl.models.emb.spectral)
split() (in module cogdl.datasets.tu_data)
split_dataset() (cogdl.models.nn.diffpool.DiffPool class method)
(cogdl.models.nn.gin.GIN class method)
(cogdl.models.nn.infograph.InfoGraph class method)
(cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_hgpsl.HGPSL class method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork class method)
(cogdl.models.nn.sortpool.SortPool class method)
split_dataset_general() (in module cogdl.utils.utils)
SRGCN (class in cogdl.models.nn.pyg_srgcn)
stpgnn (class in cogdl.models.nn.stpgnn)
subgraph() (cogdl.data.Graph method)
SumAggregator (class in cogdl.layers.sage_layer)
sup_forward() (cogdl.models.nn.infograph.InfoGraph method)
sup_loss() (cogdl.models.nn.infograph.InfoGraph method)
SupervisedHeterogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedHomogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedModel (class in cogdl.models.supervised_model)
sym_norm() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
T
tabulate_results() (in module cogdl.utils.utils)
test_nid (cogdl.data.Graph attribute)
test_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
test_step() (cogdl.tasks.link_prediction.TripleLinkPrediction method)
TestBioDataset (class in cogdl.datasets.strategies_data)
TestChemDataset (class in cogdl.datasets.strategies_data)
TestDataset (class in cogdl.datasets.kg_data)
TKipfGCN (class in cogdl.models.nn.gcn)
to_scipy_csr() (cogdl.data.Adjacency method)
(cogdl.data.Graph method)
TopKRanker (class in cogdl.tasks.unsupervised_node_classification)
train() (cogdl.data.Graph method)
(cogdl.models.emb.deepwalk.DeepWalk method)
(cogdl.models.emb.dngr.DNGR method)
(cogdl.models.emb.gatne.GATNE method)
(cogdl.models.emb.grarep.GraRep method)
(cogdl.models.emb.hin2vec.Hin2vec method)
(cogdl.models.emb.hope.HOPE method)
(cogdl.models.emb.line.LINE method)
(cogdl.models.emb.metapath2vec.Metapath2vec method)
(cogdl.models.emb.netmf.NetMF method)
(cogdl.models.emb.netsmf.NetSMF method)
(cogdl.models.emb.node2vec.Node2vec method)
(cogdl.models.emb.prone.ProNE method)
(cogdl.models.emb.pte.PTE method)
(cogdl.models.emb.sdne.SDNE method)
(cogdl.models.emb.spectral.Spectral method)
(cogdl.models.nn.dgl_gcc.GCC method)
(cogdl.tasks.attributed_graph_clustering.AttributedGraphClustering method)
(cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.graph_classification.GraphClassification method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification method)
(cogdl.tasks.link_prediction.GNNHomoLinkPrediction method)
(cogdl.tasks.link_prediction.HomoLinkPrediction method)
(cogdl.tasks.link_prediction.KGLinkPrediction method)
(cogdl.tasks.link_prediction.LinkPrediction method)
(cogdl.tasks.link_prediction.TripleLinkPrediction method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification method)
(cogdl.tasks.node_classification.NodeClassification method)
(cogdl.tasks.pretrain.PretrainTask method)
(cogdl.tasks.similarity_search.SimilaritySearch method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
(in module cogdl.experiments)
train_nid (cogdl.data.Graph attribute)
train_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
train_step() (cogdl.tasks.link_prediction.TripleLinkPrediction method)
train_test_edge_split() (cogdl.tasks.link_prediction.GNNHomoLinkPrediction static method)
TrainDataset (class in cogdl.datasets.kg_data)
TransE (class in cogdl.models.emb.transe)
TripleLinkPrediction (class in cogdl.tasks.link_prediction)
try_import_dataset() (in module cogdl.datasets)
try_import_model() (in module cogdl.models)
try_import_task() (in module cogdl.tasks)
TUDataset (class in cogdl.datasets.tu_data)
TwitterDataset (class in cogdl.datasets.gatne)
U
uniform_node_feature() (in module cogdl.tasks.graph_classification)
unsup_forward() (cogdl.models.nn.infograph.InfoGraph method)
unsup_loss() (cogdl.models.nn.infograph.InfoGraph method)
unsup_sup_loss() (cogdl.models.nn.infograph.InfoGraph method)
UnsupervisedGraphClassification (class in cogdl.tasks.unsupervised_graph_classification)
UnsupervisedNodeClassification (class in cogdl.tasks.unsupervised_node_classification)
untar() (in module cogdl.utils.utils)
update_args_from_dict() (in module cogdl.utils.utils)
url (cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
USAAirportDataset (class in cogdl.datasets.gcc_data)
V
val_nid (cogdl.data.Graph attribute)
valid_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
variant_args_generator() (in module cogdl.experiments)
W
walk() (cogdl.utils.sampling.RandomWalker method)
WikipediaDataset (class in cogdl.datasets.matlab_matrix)
wl_iterations() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
WN18Datset (class in cogdl.datasets.kg_data)
WN18RRDataset (class in cogdl.datasets.kg_data)
Y
YouTubeDataset (class in cogdl.datasets.gatne)
YoutubeNEDataset (class in cogdl.datasets.matlab_matrix)
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