CogDL
0.3.0
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A
accuracy() (in module cogdl.utils.evaluator)
ACM_GTNDataset (class in cogdl.datasets.gtn_data)
ACM_HANDataset (class in cogdl.datasets.han_data)
act_attention() (in module cogdl.layers.srgcn_module)
act_map() (in module cogdl.layers.srgcn_module)
act_normalization() (in module cogdl.layers.srgcn_module)
add_args() (cogdl.data.Dataset static method)
(cogdl.layers.strategies_layers.ContextPredictTrainer static method)
(cogdl.layers.strategies_layers.Finetuner static method)
(cogdl.layers.strategies_layers.InfoMaxTrainer static method)
(cogdl.layers.strategies_layers.MaskTrainer static method)
(cogdl.layers.strategies_layers.SupervisedTrainer static method)
(cogdl.models.agc.agc.AGC static method)
(cogdl.models.agc.daegc.DAEGC static method)
(cogdl.models.base_model.BaseModel static method)
(cogdl.models.emb.deepwalk.DeepWalk static method)
(cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.dngr.DNGR static method)
(cogdl.models.emb.gatne.GATNE static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
(cogdl.models.emb.grarep.GraRep static method)
(cogdl.models.emb.hin2vec.Hin2vec static method)
(cogdl.models.emb.hope.HOPE static method)
(cogdl.models.emb.line.LINE static method)
(cogdl.models.emb.metapath2vec.Metapath2vec static method)
(cogdl.models.emb.netmf.NetMF static method)
(cogdl.models.emb.netsmf.NetSMF static method)
(cogdl.models.emb.node2vec.Node2vec static method)
(cogdl.models.emb.prone.ProNE static method)
(cogdl.models.emb.pronepp.ProNEPP static method)
(cogdl.models.emb.pte.PTE static method)
(cogdl.models.emb.sdne.SDNE static method)
(cogdl.models.emb.spectral.Spectral static method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN static method)
(cogdl.models.nn.deepergcn.DeeperGCN static method)
(cogdl.models.nn.dgi.DGIModel static method)
(cogdl.models.nn.dgl_gcc.GCC static method)
(cogdl.models.nn.dgl_jknet.JKNet static method)
(cogdl.models.nn.diffpool.DiffPool static method)
(cogdl.models.nn.disengcn.DisenGCN static method)
(cogdl.models.nn.drgat.DrGAT static method)
(cogdl.models.nn.drgcn.DrGCN static method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN static method)
(cogdl.models.nn.gat.GAT static method)
(cogdl.models.nn.gcn.TKipfGCN static method)
(cogdl.models.nn.gcnii.GCNII static method)
(cogdl.models.nn.gcnmix.GCNMix static method)
(cogdl.models.nn.gdc_gcn.GDC_GCN static method)
(cogdl.models.nn.gin.GIN static method)
(cogdl.models.nn.grace.GRACE static method)
(cogdl.models.nn.grand.Grand static method)
(cogdl.models.nn.graphsage.Graphsage static method)
(cogdl.models.nn.han.HAN static method)
(cogdl.models.nn.infograph.InfoGraph static method)
(cogdl.models.nn.mixhop.MixHop static method)
(cogdl.models.nn.mlp.MLP static method)
(cogdl.models.nn.mvgrl.MVGRL static method)
(cogdl.models.nn.pairnorm.PairNorm static method)
(cogdl.models.nn.patchy_san.PatchySAN static method)
(cogdl.models.nn.ppnp.PPNP static method)
(cogdl.models.nn.pprgo.PPRGo static method)
(cogdl.models.nn.pyg_cheb.Chebyshev static method)
(cogdl.models.nn.pyg_dgcnn.DGCNN static method)
(cogdl.models.nn.pyg_gcn.GCN static method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet static method)
(cogdl.models.nn.pyg_gtn.GTN static method)
(cogdl.models.nn.pyg_hgpsl.HGPSL static method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork static method)
(cogdl.models.nn.pyg_srgcn.SRGCN static method)
(cogdl.models.nn.rgcn.LinkPredictRGCN static method)
(cogdl.models.nn.sgc.sgc static method)
(cogdl.models.nn.sign.MLP static method)
(cogdl.models.nn.sortpool.SortPool static method)
(cogdl.models.nn.stpgnn.stpgnn static method)
(cogdl.models.nn.unsup_graphsage.SAGE static method)
(cogdl.tasks.attributed_graph_clustering.AttributedGraphClustering static method)
(cogdl.tasks.base_task.BaseTask static method)
(cogdl.tasks.graph_classification.GraphClassification static method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification static method)
(cogdl.tasks.link_prediction.LinkPrediction static method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction static method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification static method)
(cogdl.tasks.node_classification.NodeClassification static method)
(cogdl.tasks.pretrain.PretrainTask static method)
(cogdl.tasks.similarity_search.SimilaritySearch static method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification static method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification static method)
add_dataset_args() (in module cogdl.options)
add_edge() (cogdl.layers.gpt_gnn_module.Graph method)
add_model_args() (in module cogdl.options)
add_node() (cogdl.layers.gpt_gnn_module.Graph method)
add_remaining_self_loops() (in module cogdl.utils.utils)
add_reverse_edges() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
add_self_loops() (in module cogdl.utils.utils)
add_task_args() (in module cogdl.options)
add_trainer_args() (in module cogdl.options)
adj_pow_x() (cogdl.layers.mixhop_layer.MixHopLayer method)
after_pooling_forward() (cogdl.models.nn.diffpool.DiffPool method)
AGC (class in cogdl.models.agc.agc)
aggr() (cogdl.layers.maggregator.SumAggregator static method)
(cogdl.layers.strategies_layers.GINConv method)
alias_draw() (in module cogdl.utils.utils)
alias_setup() (in module cogdl.utils.utils)
AmazonDataset (class in cogdl.datasets.gatne)
apply() (cogdl.data.Data method)
apply_to_device() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
ApplyNodeFunc (class in cogdl.layers.gcc_module)
ArgClass (class in cogdl.utils.utils)
args_print() (in module cogdl.layers.gpt_gnn_module)
AttributedGraphClustering (class in cogdl.tasks.attributed_graph_clustering)
auto_experiment() (in module cogdl.experiments)
AutoML (class in cogdl.experiments)
B
BACEDataset (class in cogdl.datasets.strategies_data)
BaseModel (class in cogdl.models.base_model)
BaseTask (class in cogdl.tasks.base_task)
Batch (class in cogdl.data)
batch_mean_pooling() (in module cogdl.utils.utils)
batch_sum_pooling() (in module cogdl.utils.utils)
BatchAE (class in cogdl.datasets.strategies_data)
batched_loss() (cogdl.models.nn.grace.GRACE method)
BatchFinetune (class in cogdl.datasets.strategies_data)
BatchMasking (class in cogdl.datasets.strategies_data)
BatchSubstructContext (class in cogdl.datasets.strategies_data)
BBBPDataset (class in cogdl.datasets.strategies_data)
bce_with_logits_loss() (in module cogdl.utils.evaluator)
BidirectionalOneShotIterator (class in cogdl.datasets.kg_data)
BioDataset (class in cogdl.datasets.strategies_data)
BlogcatalogDataset (class in cogdl.datasets.matlab_matrix)
build_args_from_dict() (in module cogdl.utils.utils)
build_dataset() (in module cogdl.datasets)
build_dataset_from_name() (in module cogdl.datasets)
build_dataset_from_path() (in module cogdl.datasets)
build_model() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.models.nn.patchy_san.PatchySAN method)
(in module cogdl.models)
build_model_from_args() (cogdl.models.agc.agc.AGC class method)
(cogdl.models.agc.daegc.DAEGC class method)
(cogdl.models.base_model.BaseModel class method)
(cogdl.models.emb.deepwalk.DeepWalk class method)
(cogdl.models.emb.dgk.DeepGraphKernel class method)
(cogdl.models.emb.dngr.DNGR class method)
(cogdl.models.emb.gatne.GATNE class method)
(cogdl.models.emb.graph2vec.Graph2Vec class method)
(cogdl.models.emb.grarep.GraRep class method)
(cogdl.models.emb.hin2vec.Hin2vec class method)
(cogdl.models.emb.hope.HOPE class method)
(cogdl.models.emb.line.LINE class method)
(cogdl.models.emb.metapath2vec.Metapath2vec class method)
(cogdl.models.emb.netmf.NetMF class method)
(cogdl.models.emb.netsmf.NetSMF class method)
(cogdl.models.emb.node2vec.Node2vec class method)
(cogdl.models.emb.prone.ProNE class method)
(cogdl.models.emb.pronepp.ProNEPP class method)
(cogdl.models.emb.pte.PTE class method)
(cogdl.models.emb.sdne.SDNE class method)
(cogdl.models.emb.spectral.Spectral class method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN class method)
(cogdl.models.nn.deepergcn.DeeperGCN class method)
(cogdl.models.nn.dgi.DGIModel class method)
(cogdl.models.nn.dgl_gcc.GCC class method)
(cogdl.models.nn.dgl_jknet.JKNet class method)
(cogdl.models.nn.diffpool.DiffPool class method)
(cogdl.models.nn.disengcn.DisenGCN class method)
(cogdl.models.nn.drgat.DrGAT class method)
(cogdl.models.nn.drgcn.DrGCN class method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN class method)
(cogdl.models.nn.gat.GAT class method)
(cogdl.models.nn.gcn.TKipfGCN class method)
(cogdl.models.nn.gcnii.GCNII class method)
(cogdl.models.nn.gcnmix.GCNMix class method)
(cogdl.models.nn.gdc_gcn.GDC_GCN class method)
(cogdl.models.nn.gin.GIN class method)
(cogdl.models.nn.grace.GRACE class method)
(cogdl.models.nn.grand.Grand class method)
(cogdl.models.nn.graphsage.Graphsage class method)
(cogdl.models.nn.han.HAN class method)
(cogdl.models.nn.infograph.InfoGraph class method)
(cogdl.models.nn.mixhop.MixHop class method)
(cogdl.models.nn.mlp.MLP class method)
(cogdl.models.nn.mvgrl.MVGRL class method)
(cogdl.models.nn.pairnorm.PairNorm class method)
(cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.ppnp.PPNP class method)
(cogdl.models.nn.pprgo.PPRGo class method)
(cogdl.models.nn.pyg_cheb.Chebyshev class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_gcn.GCN class method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN class method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet class method)
(cogdl.models.nn.pyg_gtn.GTN class method)
(cogdl.models.nn.pyg_hgpsl.HGPSL class method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork class method)
(cogdl.models.nn.pyg_srgcn.SRGCN class method)
(cogdl.models.nn.rgcn.LinkPredictRGCN class method)
(cogdl.models.nn.sgc.sgc class method)
(cogdl.models.nn.sign.MLP class method)
(cogdl.models.nn.sortpool.SortPool class method)
(cogdl.models.nn.stpgnn.stpgnn class method)
(cogdl.models.nn.unsup_graphsage.SAGE class method)
build_task() (in module cogdl.tasks)
build_topk_ppr_matrix_from_data() (in module cogdl.layers.pprgo_modules)
build_up() (cogdl.utils.sampling.RandomWalker method)
C
cal_mrr() (in module cogdl.layers.link_prediction_module)
calc_ppr_topk_parallel (in module cogdl.layers.pprgo_modules)
cat() (in module cogdl.datasets.tu_data)
cat_dim() (cogdl.data.Data method)
(cogdl.datasets.strategies_data.BatchAE method)
(cogdl.datasets.strategies_data.BatchSubstructContext method)
Chebyshev (class in cogdl.models.nn.pyg_cheb)
chebyshev() (cogdl.layers.prone_module.HeatKernelApproximation method)
check_app() (in module cogdl.pipelines)
check_task_dataset_model_match() (in module cogdl.experiments)
ChemExtractSubstructureContextPair (class in cogdl.datasets.strategies_data)
Classifier (class in cogdl.layers.gpt_gnn_module)
clone() (cogdl.data.Data method)
coalesce() (in module cogdl.datasets.ogb)
(in module cogdl.datasets.tu_data)
(in module cogdl.utils.utils)
cogdl.data (module)
cogdl.datasets (module)
cogdl.datasets.gatne (module)
cogdl.datasets.gcc_data (module)
cogdl.datasets.gtn_data (module)
cogdl.datasets.han_data (module)
cogdl.datasets.kg_data (module)
cogdl.datasets.matlab_matrix (module)
cogdl.datasets.ogb (module)
cogdl.datasets.strategies_data (module)
cogdl.datasets.tu_data (module)
cogdl.experiments (module)
cogdl.layers.gcc_module (module)
cogdl.layers.gpt_gnn_module (module)
cogdl.layers.link_prediction_module (module)
cogdl.layers.maggregator (module)
cogdl.layers.mixhop_layer (module)
cogdl.layers.pprgo_modules (module)
cogdl.layers.prone_module (module)
cogdl.layers.se_layer (module)
cogdl.layers.srgcn_module (module)
cogdl.layers.strategies_layers (module)
cogdl.models (module)
cogdl.models.base_model (module)
cogdl.models.supervised_model (module)
cogdl.options (module)
cogdl.pipelines (module)
cogdl.tasks (module)
cogdl.tasks.attributed_graph_clustering (module)
cogdl.tasks.base_task (module)
cogdl.tasks.graph_classification (module)
cogdl.tasks.heterogeneous_node_classification (module)
cogdl.tasks.link_prediction (module)
cogdl.tasks.multiplex_link_prediction (module)
cogdl.tasks.multiplex_node_classification (module)
cogdl.tasks.node_classification (module)
cogdl.tasks.pretrain (module)
cogdl.tasks.similarity_search (module)
cogdl.tasks.unsupervised_graph_classification (module)
cogdl.tasks.unsupervised_node_classification (module)
cogdl.utils.evaluator (module)
cogdl.utils.sampling (module)
cogdl.utils.utils (module)
CollabDataset (class in cogdl.datasets.tu_data)
collate_fn() (cogdl.data.DataLoader static method)
(cogdl.datasets.kg_data.TestDataset static method)
(cogdl.datasets.kg_data.TrainDataset static method)
ColumnUniform (class in cogdl.layers.srgcn_module)
ComplEx (class in cogdl.models.emb.complex)
concat() (cogdl.layers.link_prediction_module.ConvELayer method)
consis_loss() (cogdl.models.nn.grand.Grand method)
construct_sparse() (in module cogdl.layers.pprgo_modules)
ContextPredictTrainer (class in cogdl.layers.strategies_layers)
contiguous() (cogdl.data.Data method)
contrastive_loss() (cogdl.models.nn.grace.GRACE method)
ConvELayer (class in cogdl.layers.link_prediction_module)
coo2csc() (in module cogdl.utils.utils)
coo2csr() (in module cogdl.utils.utils)
count_frequency() (cogdl.datasets.kg_data.TrainDataset static method)
cross_entropy_loss() (in module cogdl.utils.evaluator)
cuda() (cogdl.data.Data method)
cumsum() (cogdl.data.Batch method)
(cogdl.datasets.strategies_data.BatchMasking method)
(cogdl.datasets.strategies_data.BatchSubstructContext method)
cycle_index() (in module cogdl.utils.utils)
D
DAEGC (class in cogdl.models.agc.daegc)
Data (class in cogdl.data)
DataLoader (class in cogdl.data)
DataLoaderAE (class in cogdl.datasets.strategies_data)
DataLoaderFinetune (class in cogdl.datasets.strategies_data)
DataLoaderMasking (class in cogdl.datasets.strategies_data)
DataLoaderSubstructContext (class in cogdl.datasets.strategies_data)
Dataset (class in cogdl.data)
DatasetPipeline (class in cogdl.pipelines)
DatasetStatsPipeline (class in cogdl.pipelines)
DatasetVisualPipeline (class in cogdl.pipelines)
DBLP_GTNDataset (class in cogdl.datasets.gtn_data)
DBLP_HANDataset (class in cogdl.datasets.han_data)
DblpNEDataset (class in cogdl.datasets.matlab_matrix)
dcg_at_k() (in module cogdl.layers.gpt_gnn_module)
DeeperGCN (class in cogdl.models.nn.deepergcn)
DeepGraphKernel (class in cogdl.models.emb.dgk)
DeepWalk (class in cogdl.models.emb.deepwalk)
defaultDictDict() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictList() (in module cogdl.layers.gpt_gnn_module)
DGCNN (class in cogdl.models.nn.pyg_dgcnn)
DGIModel (class in cogdl.models.nn.dgi)
DiffPool (class in cogdl.models.nn.diffpool)
Discriminator (class in cogdl.layers.strategies_layers)
DisenGCN (class in cogdl.models.nn.disengcn)
DistMult (class in cogdl.models.emb.distmult)
DistMultLayer (class in cogdl.layers.link_prediction_module)
divide_data() (in module cogdl.tasks.link_prediction)
DNGR (class in cogdl.models.emb.dngr)
download() (cogdl.data.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.strategies_data.BACEDataset method)
(cogdl.datasets.strategies_data.BBBPDataset method)
(cogdl.datasets.strategies_data.BioDataset method)
(cogdl.datasets.strategies_data.MoleculeDataset method)
(cogdl.datasets.tu_data.TUDataset method)
download_url() (in module cogdl.utils.utils)
DrGAT (class in cogdl.models.nn.drgat)
DrGCN (class in cogdl.models.nn.drgcn)
drop_adj() (cogdl.models.nn.grace.GRACE method)
drop_feature() (cogdl.models.nn.grace.GRACE method)
DropEdge_GCN (class in cogdl.models.nn.dropedge_gcn)
dropNode() (cogdl.models.nn.grand.Grand method)
dropout_adj() (in module cogdl.utils.utils)
E
edge_attention() (cogdl.layers.gcc_module.GATLayer method)
edge_softmax() (in module cogdl.utils.utils)
edge_subgraph() (cogdl.data.Data method)
EdgeAttention (class in cogdl.layers.srgcn_module)
Edgelist (class in cogdl.datasets.gcc_data)
embed() (cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
enhance_emb() (cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
ENZYMES (class in cogdl.datasets.tu_data)
evaluate() (cogdl.models.nn.han.HAN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
experiment() (in module cogdl.experiments)
ExtractSubstructureContextPair (class in cogdl.datasets.strategies_data)
F
FB13Datset (class in cogdl.datasets.kg_data)
FB13SDatset (class in cogdl.datasets.kg_data)
FB15k237Datset (class in cogdl.datasets.kg_data)
FB15kDatset (class in cogdl.datasets.kg_data)
feat_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
feature_extractor() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
feature_OAG() (in module cogdl.layers.gpt_gnn_module)
feature_reddit() (in module cogdl.layers.gpt_gnn_module)
filter_adj() (in module cogdl.utils.utils)
Finetuner (class in cogdl.layers.strategies_layers)
fit() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.layers.strategies_layers.Pretrainer method)
FlickrDataset (class in cogdl.datasets.matlab_matrix)
forward() (cogdl.layers.gcc_module.ApplyNodeFunc method)
(cogdl.layers.gcc_module.GATLayer method)
(cogdl.layers.gcc_module.GraphEncoder method)
(cogdl.layers.gcc_module.MLP method)
(cogdl.layers.gcc_module.SELayer method)
(cogdl.layers.gcc_module.UnsupervisedGAT method)
(cogdl.layers.gcc_module.UnsupervisedGIN method)
(cogdl.layers.gcc_module.UnsupervisedMPNN method)
(cogdl.layers.gpt_gnn_module.Classifier method)
(cogdl.layers.gpt_gnn_module.GNN method)
(cogdl.layers.gpt_gnn_module.GPT_GNN method)
(cogdl.layers.gpt_gnn_module.GeneralConv method)
(cogdl.layers.gpt_gnn_module.HGTConv method)
(cogdl.layers.gpt_gnn_module.Matcher method)
(cogdl.layers.gpt_gnn_module.RNNModel method)
(cogdl.layers.gpt_gnn_module.RelTemporalEncoding method)
(cogdl.layers.link_prediction_module.ConvELayer method)
(cogdl.layers.link_prediction_module.DistMultLayer method)
(cogdl.layers.link_prediction_module.GNNLinkPredict method)
(cogdl.layers.maggregator.MeanAggregator method)
(cogdl.layers.maggregator.SumAggregator method)
(cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.se_layer.SELayer method)
(cogdl.layers.srgcn_module.ColumnUniform method)
(cogdl.layers.srgcn_module.EdgeAttention method)
(cogdl.layers.srgcn_module.HeatKernel method)
(cogdl.layers.srgcn_module.Identity method)
(cogdl.layers.srgcn_module.NodeAttention method)
(cogdl.layers.srgcn_module.NormIdentity method)
(cogdl.layers.srgcn_module.PPR method)
(cogdl.layers.srgcn_module.RowSoftmax method)
(cogdl.layers.srgcn_module.RowUniform method)
(cogdl.layers.srgcn_module.SymmetryNorm method)
(cogdl.layers.strategies_layers.Discriminator method)
(cogdl.layers.strategies_layers.GINConv method)
(cogdl.layers.strategies_layers.GNN method)
(cogdl.layers.strategies_layers.GNNPred method)
(cogdl.models.agc.daegc.DAEGC method)
(cogdl.models.base_model.BaseModel method)
(cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.deepergcn.DeeperGCN method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.diffpool.DiffPool method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.drgat.DrGAT method)
(cogdl.models.nn.drgcn.DrGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.gat.GAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.gin.GIN method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.han.HAN method)
(cogdl.models.nn.infograph.InfoGraph method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.pairnorm.PairNorm method)
(cogdl.models.nn.patchy_san.PatchySAN method)
(cogdl.models.nn.ppnp.PPNP method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_dgcnn.DGCNN method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.pyg_hgpsl.HGPSL method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.sgc.sgc method)
(cogdl.models.nn.sign.MLP method)
(cogdl.models.nn.sortpool.SortPool method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
forward_ema() (cogdl.models.nn.gcnmix.GCNMix method)
from_data_list() (cogdl.data.Batch static method)
(cogdl.data.MultiGraphDataset static method)
(cogdl.datasets.strategies_data.BatchAE static method)
(cogdl.datasets.strategies_data.BatchFinetune static method)
(cogdl.datasets.strategies_data.BatchMasking static method)
(cogdl.datasets.strategies_data.BatchSubstructContext static method)
from_dict() (cogdl.data.Data static method)
from_pyg_data() (cogdl.data.Data static method)
from_w2v() (cogdl.layers.gpt_gnn_module.RNNModel method)
G
GAT (class in cogdl.models.nn.gat)
GATLayer (class in cogdl.layers.gcc_module)
GATNE (class in cogdl.models.emb.gatne)
GatneDataset (class in cogdl.datasets.gatne)
Gaussian (class in cogdl.layers.prone_module)
GCC (class in cogdl.models.nn.dgl_gcc)
GCCDataset (class in cogdl.datasets.gcc_data)
GCN (class in cogdl.models.nn.pyg_gcn)
GCNII (class in cogdl.models.nn.gcnii)
GCNMix (class in cogdl.models.nn.gcnmix)
GDC_GCN (class in cogdl.models.nn.gdc_gcn)
gen_node_pairs() (in module cogdl.tasks.link_prediction)
gen_variants() (in module cogdl.experiments)
GeneralConv (class in cogdl.layers.gpt_gnn_module)
generate_data() (cogdl.tasks.graph_classification.GraphClassification method)
get() (cogdl.data.Dataset method)
(cogdl.data.MultiGraphDataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.ogb.OGBGDataset method)
(cogdl.datasets.ogb.OGBNDataset method)
(cogdl.datasets.tu_data.TUDataset method)
get_2hop() (cogdl.models.agc.daegc.DAEGC method)
get_activation() (in module cogdl.utils.utils)
get_cbow_pred() (cogdl.layers.strategies_layers.ContextPredictTrainer method)
get_csr_from_edge_index() (in module cogdl.utils.utils)
get_csr_ind() (in module cogdl.utils.utils)
get_dataset() (cogdl.layers.strategies_layers.Pretrainer method)
get_default_args() (in module cogdl.options)
get_degrees() (in module cogdl.utils.utils)
get_denoised_matrix() (cogdl.models.emb.dngr.DNGR method)
get_display_data_parser() (in module cogdl.options)
get_download_data_parser() (in module cogdl.options)
get_edge_set() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
get_emb() (cogdl.models.emb.dngr.DNGR method)
get_embedding_dense() (in module cogdl.layers.prone_module)
get_embeddings() (cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.pyg_gcn.GCN method)
get_evaluator() (cogdl.data.Dataset method)
(cogdl.datasets.ogb.OGBNDataset method)
get_features() (cogdl.models.agc.agc.AGC method)
(cogdl.models.agc.daegc.DAEGC method)
get_filtered_rank() (in module cogdl.layers.link_prediction_module)
get_link_labels() (cogdl.tasks.link_prediction.GNNHomoLinkPrediction static method)
get_loader() (cogdl.datasets.ogb.OGBGDataset method)
get_loss_fn() (cogdl.data.Dataset method)
(cogdl.datasets.ogb.OGBNDataset method)
get_meta_graph() (cogdl.layers.gpt_gnn_module.Graph method)
get_optimizer() (cogdl.models.nn.gcnii.GCNII method)
get_parser() (in module cogdl.options)
get_ppmi_matrix() (cogdl.models.emb.dngr.DNGR method)
get_rank() (in module cogdl.layers.link_prediction_module)
get_raw_rank() (in module cogdl.layers.link_prediction_module)
get_score() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
(in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
get_skipgram_pred() (cogdl.layers.strategies_layers.ContextPredictTrainer method)
get_subset() (cogdl.datasets.ogb.OGBGDataset method)
get_task_model_args() (in module cogdl.options)
get_trainer() (cogdl.models.agc.agc.AGC method)
(cogdl.models.agc.daegc.DAEGC method)
(cogdl.models.base_model.BaseModel static method)
(cogdl.models.nn.deepergcn.DeeperGCN static method)
(cogdl.models.nn.dgi.DGIModel static method)
(cogdl.models.nn.dgl_jknet.JKNet static method)
(cogdl.models.nn.grace.GRACE static method)
(cogdl.models.nn.graphsage.Graphsage static method)
(cogdl.models.nn.mvgrl.MVGRL static method)
(cogdl.models.nn.pprgo.PPRGo static method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.nn.unsup_graphsage.SAGE static method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel static method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel static method)
(cogdl.tasks.base_task.BaseTask method)
get_training_parser() (in module cogdl.options)
get_true_head_and_tail() (cogdl.datasets.kg_data.TrainDataset static method)
get_types() (cogdl.layers.gpt_gnn_module.Graph method)
GIN (class in cogdl.models.nn.gin)
GINConv (class in cogdl.layers.strategies_layers)
GNN (class in cogdl.layers.gpt_gnn_module)
(class in cogdl.layers.strategies_layers)
GNNHomoLinkPrediction (class in cogdl.tasks.link_prediction)
GNNLinkPredict (class in cogdl.layers.link_prediction_module)
GNNPred (class in cogdl.layers.strategies_layers)
GPT_GNN (class in cogdl.layers.gpt_gnn_module)
(class in cogdl.models.nn.pyg_gpt_gnn)
GRACE (class in cogdl.models.nn.grace)
Grand (class in cogdl.models.nn.grand)
Graph (class in cogdl.layers.gpt_gnn_module)
Graph2Vec (class in cogdl.models.emb.graph2vec)
graph_classification_loss() (cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.infograph.InfoGraph method)
graph_classificatoin_loss() (cogdl.models.nn.diffpool.DiffPool method)
graph_data_obj_to_nx() (in module cogdl.datasets.strategies_data)
graph_data_obj_to_nx_simple() (in module cogdl.datasets.strategies_data)
GraphClassification (class in cogdl.tasks.graph_classification)
GraphEncoder (class in cogdl.layers.gcc_module)
Graphsage (class in cogdl.models.nn.graphsage)
GraphUnet (class in cogdl.models.nn.pyg_graph_unet)
GraRep (class in cogdl.models.emb.grarep)
GTN (class in cogdl.models.nn.pyg_gtn)
GTNDataset (class in cogdl.datasets.gtn_data)
H
HAN (class in cogdl.models.nn.han)
HANDataset (class in cogdl.datasets.han_data)
HeatKernel (class in cogdl.layers.prone_module)
(class in cogdl.layers.srgcn_module)
HeatKernelApproximation (class in cogdl.layers.prone_module)
HeterogeneousNodeClassification (class in cogdl.tasks.heterogeneous_node_classification)
HGPSL (class in cogdl.models.nn.pyg_hgpsl)
HGTConv (class in cogdl.layers.gpt_gnn_module)
Hin2vec (class in cogdl.models.emb.hin2vec)
HomoLinkPrediction (class in cogdl.tasks.link_prediction)
HOPE (class in cogdl.models.emb.hope)
I
Identity (class in cogdl.layers.srgcn_module)
IMDB_GTNDataset (class in cogdl.datasets.gtn_data)
IMDB_HANDataset (class in cogdl.datasets.han_data)
ImdbBinaryDataset (class in cogdl.datasets.tu_data)
ImdbMultiDataset (class in cogdl.datasets.tu_data)
inference() (cogdl.models.nn.graphsage.Graphsage method)
InfoGraph (class in cogdl.models.nn.infograph)
InfoMaxTrainer (class in cogdl.layers.strategies_layers)
initialize_spmm() (in module cogdl.utils.utils)
is_coalesced() (cogdl.data.Data method)
J
JKNet (class in cogdl.models.nn.dgl_jknet)
K
KDD_ICDM_GCCDataset (class in cogdl.datasets.gcc_data)
keys (cogdl.data.Data attribute)
KGLinkPrediction (class in cogdl.tasks.link_prediction)
KnowledgeGraphDataset (class in cogdl.datasets.kg_data)
L
len() (cogdl.data.MultiGraphDataset method)
LINE (class in cogdl.models.emb.line)
link_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
LinkPredictCompGCN (class in cogdl.models.nn.compgcn)
LinkPrediction (class in cogdl.tasks.link_prediction)
LinkPredictRGCN (class in cogdl.models.nn.rgcn)
load_from_pretrained() (cogdl.layers.strategies_layers.GNNPred method)
(cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.link_prediction.LinkPrediction method)
load_gnn() (in module cogdl.layers.gpt_gnn_module)
LoadFrom (class in cogdl.tasks.base_task)
log_metrics() (in module cogdl.tasks.link_prediction)
loss() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.han.HAN method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedModel method)
M
makedirs() (in module cogdl.utils.utils)
MaskAtom (class in cogdl.datasets.strategies_data)
MaskEdge (class in cogdl.datasets.strategies_data)
MaskTrainer (class in cogdl.layers.strategies_layers)
Matcher (class in cogdl.layers.gpt_gnn_module)
MatlabMatrix (class in cogdl.datasets.matlab_matrix)
mean_reciprocal_rank() (in module cogdl.layers.gpt_gnn_module)
MeanAggregator (class in cogdl.layers.maggregator)
message() (cogdl.layers.gpt_gnn_module.HGTConv method)
message_func() (cogdl.layers.gcc_module.GATLayer method)
Metapath2vec (class in cogdl.models.emb.metapath2vec)
mi_loss() (cogdl.models.nn.infograph.InfoGraph static method)
mini_forward() (cogdl.models.nn.graphsage.Graphsage method)
mini_loss() (cogdl.models.nn.graphsage.Graphsage method)
MixHop (class in cogdl.models.nn.mixhop)
MixHopLayer (class in cogdl.layers.mixhop_layer)
MLP (class in cogdl.layers.gcc_module)
(class in cogdl.models.nn.mlp)
(class in cogdl.models.nn.sign)
model_name (cogdl.models.agc.agc.AGC attribute)
(cogdl.models.agc.daegc.DAEGC attribute)
(cogdl.models.emb.complex.ComplEx attribute)
(cogdl.models.emb.deepwalk.DeepWalk attribute)
(cogdl.models.emb.dgk.DeepGraphKernel attribute)
(cogdl.models.emb.distmult.DistMult attribute)
(cogdl.models.emb.dngr.DNGR attribute)
(cogdl.models.emb.gatne.GATNE attribute)
(cogdl.models.emb.graph2vec.Graph2Vec attribute)
(cogdl.models.emb.grarep.GraRep attribute)
(cogdl.models.emb.hin2vec.Hin2vec attribute)
(cogdl.models.emb.hope.HOPE attribute)
(cogdl.models.emb.line.LINE attribute)
(cogdl.models.emb.metapath2vec.Metapath2vec attribute)
(cogdl.models.emb.netmf.NetMF attribute)
(cogdl.models.emb.netsmf.NetSMF attribute)
(cogdl.models.emb.node2vec.Node2vec attribute)
(cogdl.models.emb.prone.ProNE attribute)
(cogdl.models.emb.pronepp.ProNEPP attribute)
(cogdl.models.emb.pte.PTE attribute)
(cogdl.models.emb.rotate.RotatE attribute)
(cogdl.models.emb.sdne.SDNE attribute)
(cogdl.models.emb.spectral.Spectral attribute)
(cogdl.models.emb.transe.TransE attribute)
(cogdl.models.nn.compgcn.LinkPredictCompGCN attribute)
(cogdl.models.nn.deepergcn.DeeperGCN attribute)
(cogdl.models.nn.dgi.DGIModel attribute)
(cogdl.models.nn.dgl_gcc.GCC attribute)
(cogdl.models.nn.dgl_jknet.JKNet attribute)
(cogdl.models.nn.diffpool.DiffPool attribute)
(cogdl.models.nn.disengcn.DisenGCN attribute)
(cogdl.models.nn.drgat.DrGAT attribute)
(cogdl.models.nn.drgcn.DrGCN attribute)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN attribute)
(cogdl.models.nn.gat.GAT attribute)
(cogdl.models.nn.gcn.TKipfGCN attribute)
(cogdl.models.nn.gcnii.GCNII attribute)
(cogdl.models.nn.gcnmix.GCNMix attribute)
(cogdl.models.nn.gdc_gcn.GDC_GCN attribute)
(cogdl.models.nn.gin.GIN attribute)
(cogdl.models.nn.grace.GRACE attribute)
(cogdl.models.nn.grand.Grand attribute)
(cogdl.models.nn.graphsage.Graphsage attribute)
(cogdl.models.nn.han.HAN attribute)
(cogdl.models.nn.infograph.InfoGraph attribute)
(cogdl.models.nn.mixhop.MixHop attribute)
(cogdl.models.nn.mlp.MLP attribute)
(cogdl.models.nn.mvgrl.MVGRL attribute)
(cogdl.models.nn.pairnorm.PairNorm attribute)
(cogdl.models.nn.patchy_san.PatchySAN attribute)
(cogdl.models.nn.ppnp.PPNP attribute)
(cogdl.models.nn.pprgo.PPRGo attribute)
(cogdl.models.nn.pyg_cheb.Chebyshev attribute)
(cogdl.models.nn.pyg_dgcnn.DGCNN attribute)
(cogdl.models.nn.pyg_gcn.GCN attribute)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN attribute)
(cogdl.models.nn.pyg_graph_unet.GraphUnet attribute)
(cogdl.models.nn.pyg_gtn.GTN attribute)
(cogdl.models.nn.pyg_hgpsl.HGPSL attribute)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork attribute)
(cogdl.models.nn.pyg_srgcn.SRGCN attribute)
(cogdl.models.nn.rgcn.LinkPredictRGCN attribute)
(cogdl.models.nn.sgc.sgc attribute)
(cogdl.models.nn.sign.MLP attribute)
(cogdl.models.nn.sortpool.SortPool attribute)
(cogdl.models.nn.stpgnn.stpgnn attribute)
(cogdl.models.nn.unsup_graphsage.SAGE attribute)
MoleculeDataset (class in cogdl.datasets.strategies_data)
mul_edge_softmax() (in module cogdl.utils.utils)
multiclass_f1() (in module cogdl.utils.evaluator)
MultiGraphDataset (class in cogdl.data)
multilabel_f1() (in module cogdl.utils.evaluator)
MultiplexLinkPrediction (class in cogdl.tasks.multiplex_link_prediction)
MultiplexNodeClassification (class in cogdl.tasks.multiplex_node_classification)
MUTAGDataset (class in cogdl.datasets.tu_data)
MVGRL (class in cogdl.models.nn.mvgrl)
N
NCT109Dataset (class in cogdl.datasets.tu_data)
NCT1Dataset (class in cogdl.datasets.tu_data)
ndcg_at_k() (in module cogdl.layers.gpt_gnn_module)
neg_sample() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
negative_edge_sampling() (in module cogdl.utils.utils)
NegativeEdge (class in cogdl.datasets.strategies_data)
NetMF (class in cogdl.models.emb.netmf)
NetSMF (class in cogdl.models.emb.netsmf)
NetworkEmbeddingCMTYDataset (class in cogdl.datasets.matlab_matrix)
Node2vec (class in cogdl.models.emb.node2vec)
node_classification_loss() (cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.grace.GRACE method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.sign.MLP method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
node_degree_as_feature() (in module cogdl.tasks.graph_classification)
node_feature (cogdl.layers.gpt_gnn_module.Graph attribute)
NodeAdaptiveEncoder (class in cogdl.layers.prone_module)
NodeAttention (class in cogdl.layers.srgcn_module)
NodeClassification (class in cogdl.tasks.node_classification)
norm() (cogdl.layers.maggregator.MeanAggregator static method)
(cogdl.models.nn.pyg_gtn.GTN method)
normalization() (cogdl.models.nn.pyg_gtn.GTN method)
normalize() (in module cogdl.layers.gpt_gnn_module)
normalize_feature() (in module cogdl.datasets.tu_data)
normalize_x() (cogdl.models.nn.grand.Grand method)
NormIdentity (class in cogdl.layers.srgcn_module)
num_classes (cogdl.data.Data attribute)
(cogdl.data.Dataset attribute)
(cogdl.data.MultiGraphDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.ogb.OGBGDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
num_edge_attributes (cogdl.datasets.tu_data.TUDataset attribute)
num_edge_labels (cogdl.datasets.tu_data.TUDataset attribute)
num_edges (cogdl.data.Data attribute)
num_entities (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
num_features (cogdl.data.Data attribute)
(cogdl.data.Dataset attribute)
num_graphs (cogdl.data.Batch attribute)
(cogdl.datasets.strategies_data.BatchAE attribute)
(cogdl.datasets.strategies_data.BatchFinetune attribute)
(cogdl.datasets.strategies_data.BatchMasking attribute)
(cogdl.datasets.strategies_data.BatchSubstructContext attribute)
num_node_attributes (cogdl.datasets.tu_data.TUDataset attribute)
num_node_labels (cogdl.datasets.tu_data.TUDataset attribute)
num_nodes (cogdl.data.Data attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
num_relations (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
nx_to_graph_data_obj() (in module cogdl.datasets.strategies_data)
nx_to_graph_data_obj_simple() (in module cogdl.datasets.strategies_data)
O
OAGBertInferencePipepline (class in cogdl.pipelines)
OGBArxivDataset (class in cogdl.datasets.ogb)
OGBCodeDataset (class in cogdl.datasets.ogb)
OGBGDataset (class in cogdl.datasets.ogb)
OGBMAGDataset (class in cogdl.datasets.ogb)
OGBMolbaceDataset (class in cogdl.datasets.ogb)
OGBMolhivDataset (class in cogdl.datasets.ogb)
OGBMolpcbaDataset (class in cogdl.datasets.ogb)
OGBNDataset (class in cogdl.datasets.ogb)
OGBPapers100MDataset (class in cogdl.datasets.ogb)
OGBPpaDataset (class in cogdl.datasets.ogb)
OGBProductsDataset (class in cogdl.datasets.ogb)
OGBProteinsDataset (class in cogdl.datasets.ogb)
one_shot_iterator() (cogdl.datasets.kg_data.BidirectionalOneShotIterator static method)
output_results() (in module cogdl.experiments)
P
PairNorm (class in cogdl.models.nn.pairnorm)
parse_args_and_arch() (in module cogdl.options)
parse_txt_array() (in module cogdl.datasets.tu_data)
PatchySAN (class in cogdl.models.nn.patchy_san)
Pipeline (class in cogdl.pipelines)
pipeline() (in module cogdl.pipelines)
pool() (cogdl.layers.strategies_layers.GNNPred method)
PPIDataset (class in cogdl.datasets.matlab_matrix)
PPNP (class in cogdl.models.nn.ppnp)
PPR (class in cogdl.layers.prone_module)
(class in cogdl.layers.srgcn_module)
ppr_topk() (in module cogdl.layers.pprgo_modules)
PPRGo (class in cogdl.models.nn.pprgo)
PPRGoDataset (class in cogdl.layers.pprgo_modules)
predict() (cogdl.layers.link_prediction_module.ConvELayer method)
(cogdl.layers.link_prediction_module.DistMultLayer method)
(cogdl.models.base_model.BaseModel method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.deepergcn.DeeperGCN method)
(cogdl.models.nn.dgl_jknet.JKNet method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.drgat.DrGAT method)
(cogdl.models.nn.drgcn.DrGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.gat.GAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.gcnmix.GCNMix method)
(cogdl.models.nn.gdc_gcn.GDC_GCN method)
(cogdl.models.nn.grand.Grand method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.pairnorm.PairNorm method)
(cogdl.models.nn.ppnp.PPNP method)
(cogdl.models.nn.pprgo.PPRGo method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_graph_unet.GraphUnet method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.sgc.sgc method)
(cogdl.models.nn.sign.MLP method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.tasks.unsupervised_node_classification.TopKRanker method)
preprocess() (cogdl.datasets.gcc_data.GCCDataset method)
(cogdl.models.nn.mvgrl.MVGRL method)
preprocess_dataset() (in module cogdl.layers.gpt_gnn_module)
preprocessing() (cogdl.models.nn.gdc_gcn.GDC_GCN method)
Pretrainer (class in cogdl.layers.strategies_layers)
PretrainTask (class in cogdl.tasks.pretrain)
print_result() (in module cogdl.utils.utils)
process() (cogdl.data.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset method)
(cogdl.datasets.strategies_data.BACEDataset method)
(cogdl.datasets.strategies_data.BBBPDataset method)
(cogdl.datasets.strategies_data.BioDataset method)
(cogdl.datasets.strategies_data.MoleculeDataset method)
(cogdl.datasets.tu_data.TUDataset method)
processed_file_names (cogdl.data.Dataset attribute)
(cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.strategies_data.BACEDataset attribute)
(cogdl.datasets.strategies_data.BBBPDataset attribute)
(cogdl.datasets.strategies_data.BioDataset attribute)
(cogdl.datasets.strategies_data.MoleculeDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
processed_paths (cogdl.data.Dataset attribute)
ProNE (class in cogdl.layers.prone_module)
(class in cogdl.models.emb.prone)
ProNEPP (class in cogdl.models.emb.pronepp)
prop() (cogdl.layers.prone_module.Gaussian method)
(cogdl.layers.prone_module.HeatKernel method)
(cogdl.layers.prone_module.HeatKernelApproximation method)
(cogdl.layers.prone_module.NodeAdaptiveEncoder static method)
(cogdl.layers.prone_module.PPR method)
(cogdl.layers.prone_module.SignalRescaling method)
(cogdl.models.nn.grace.GRACE method)
prop_adjacency() (cogdl.layers.prone_module.HeatKernel method)
propagate() (in module cogdl.layers.prone_module)
ProtainsDataset (class in cogdl.datasets.tu_data)
PTCMRDataset (class in cogdl.datasets.tu_data)
PTE (class in cogdl.models.emb.pte)
R
rand_prop() (cogdl.models.nn.grand.Grand method)
randint() (in module cogdl.layers.gpt_gnn_module)
random_surfing() (cogdl.models.emb.dngr.DNGR method)
random_walk (in module cogdl.utils.sampling)
randomly_choose_false_edges() (in module cogdl.tasks.link_prediction)
RandomWalker (class in cogdl.utils.sampling)
raw_experiment() (in module cogdl.experiments)
raw_file_names (cogdl.data.Dataset attribute)
(cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.gtn_data.GTNDataset attribute)
(cogdl.datasets.han_data.HANDataset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.matlab_matrix.MatlabMatrix attribute)
(cogdl.datasets.matlab_matrix.NetworkEmbeddingCMTYDataset attribute)
(cogdl.datasets.strategies_data.BACEDataset attribute)
(cogdl.datasets.strategies_data.BBBPDataset attribute)
(cogdl.datasets.strategies_data.BioDataset attribute)
(cogdl.datasets.strategies_data.MoleculeDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
raw_paths (cogdl.data.Dataset attribute)
read_file() (in module cogdl.datasets.tu_data)
read_gatne_data() (in module cogdl.datasets.gatne)
read_gtn_data() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
read_triplet_data() (in module cogdl.datasets.kg_data)
read_tu_data() (in module cogdl.datasets.tu_data)
read_txt_array() (in module cogdl.datasets.tu_data)
recon_loss() (cogdl.models.agc.daegc.DAEGC method)
RedditBinary (class in cogdl.datasets.tu_data)
RedditMulti12K (class in cogdl.datasets.tu_data)
RedditMulti5K (class in cogdl.datasets.tu_data)
reduce_func() (cogdl.layers.gcc_module.GATLayer method)
register_dataset() (in module cogdl.datasets)
register_model() (in module cogdl.models)
register_task() (in module cogdl.tasks)
RelTemporalEncoding (class in cogdl.layers.gpt_gnn_module)
remove_self_loops() (in module cogdl.utils.utils)
reset_data() (cogdl.models.nn.gdc_gcn.GDC_GCN method)
reset_idxes() (in module cogdl.datasets.strategies_data)
reset_parameters() (cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.strategies_layers.Discriminator method)
(cogdl.models.nn.diffpool.DiffPool method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.dropedge_gcn.DropEdge_GCN method)
(cogdl.models.nn.infograph.InfoGraph method)
(cogdl.models.nn.sign.MLP method)
RNNModel (class in cogdl.layers.gpt_gnn_module)
RotatE (class in cogdl.models.emb.rotate)
row_normalization() (in module cogdl.utils.utils)
RowSoftmax (class in cogdl.layers.srgcn_module)
RowUniform (class in cogdl.layers.srgcn_module)
run() (cogdl.experiments.AutoML method)
S
SAGE (class in cogdl.models.nn.unsup_graphsage)
SAGPoolNetwork (class in cogdl.models.nn.pyg_sagpool)
sample_adj() (cogdl.data.Data method)
sample_mask() (in module cogdl.datasets.han_data)
sample_subgraph() (in module cogdl.layers.gpt_gnn_module)
sampling() (cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.unsup_graphsage.SAGE method)
sampling_edge_uniform() (in module cogdl.layers.link_prediction_module)
save_checkpoint() (cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.link_prediction.LinkPrediction method)
save_emb() (cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
save_embedding() (cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
save_model() (in module cogdl.tasks.link_prediction)
scale_matrix() (cogdl.models.emb.dngr.DNGR method)
score() (cogdl.models.emb.complex.ComplEx method)
(cogdl.models.emb.distmult.DistMult method)
(cogdl.models.emb.rotate.RotatE method)
(cogdl.models.emb.transe.TransE method)
SDNE (class in cogdl.models.emb.sdne)
segment() (in module cogdl.datasets.tu_data)
SELayer (class in cogdl.layers.gcc_module)
(class in cogdl.layers.se_layer)
select_task() (in module cogdl.tasks.link_prediction)
set_best_config() (in module cogdl.experiments)
set_data_device() (cogdl.models.nn.graphsage.Graphsage method)
set_device() (cogdl.models.base_model.BaseModel method)
set_evaluator() (cogdl.tasks.base_task.BaseTask method)
set_graph() (cogdl.models.nn.dgl_jknet.JKNet method)
set_logger() (in module cogdl.tasks.link_prediction)
set_loss_fn() (cogdl.models.base_model.BaseModel method)
(cogdl.tasks.base_task.BaseTask method)
set_random_seed() (in module cogdl.utils.utils)
sgc (class in cogdl.models.nn.sgc)
SIGIR_CIKM_GCCDataset (class in cogdl.datasets.gcc_data)
SIGMOD_ICDE_GCCDataset (class in cogdl.datasets.gcc_data)
SignalRescaling (class in cogdl.layers.prone_module)
SimilaritySearch (class in cogdl.tasks.similarity_search)
SortPool (class in cogdl.models.nn.sortpool)
sparse_mx_to_torch_sparse_tensor() (in module cogdl.layers.gpt_gnn_module)
Spectral (class in cogdl.models.emb.spectral)
split() (in module cogdl.datasets.tu_data)
split_data() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.layers.strategies_layers.SupervisedTrainer method)
split_dataset() (cogdl.models.nn.diffpool.DiffPool class method)
(cogdl.models.nn.gin.GIN class method)
(cogdl.models.nn.infograph.InfoGraph class method)
(cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_hgpsl.HGPSL class method)
(cogdl.models.nn.pyg_sagpool.SAGPoolNetwork class method)
(cogdl.models.nn.sortpool.SortPool class method)
spmm() (in module cogdl.utils.utils)
spmm_adj() (in module cogdl.utils.utils)
spmm_scatter() (in module cogdl.utils.utils)
SRGCN (class in cogdl.models.nn.pyg_srgcn)
stpgnn (class in cogdl.models.nn.stpgnn)
subgraph() (cogdl.data.Data method)
SumAggregator (class in cogdl.layers.maggregator)
sup_forward() (cogdl.models.nn.infograph.InfoGraph method)
sup_loss() (cogdl.models.nn.infograph.InfoGraph method)
SupervisedHeterogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedHomogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedModel (class in cogdl.models.supervised_model)
SupervisedTrainer (class in cogdl.layers.strategies_layers)
symmetric_normalization() (in module cogdl.utils.utils)
SymmetryNorm (class in cogdl.layers.srgcn_module)
T
tabulate_results() (in module cogdl.utils.utils)
taylor() (cogdl.layers.prone_module.HeatKernelApproximation method)
test_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
TestBioDataset (class in cogdl.datasets.strategies_data)
TestChemDataset (class in cogdl.datasets.strategies_data)
TestDataset (class in cogdl.datasets.kg_data)
text_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
TKipfGCN (class in cogdl.models.nn.gcn)
to() (cogdl.data.Data method)
to_torch() (in module cogdl.layers.gpt_gnn_module)
to_undirected() (in module cogdl.utils.utils)
topk_ppr_matrix() (in module cogdl.layers.pprgo_modules)
TopKRanker (class in cogdl.tasks.unsupervised_node_classification)
train() (cogdl.models.emb.deepwalk.DeepWalk method)
(cogdl.models.emb.dngr.DNGR method)
(cogdl.models.emb.gatne.GATNE method)
(cogdl.models.emb.grarep.GraRep method)
(cogdl.models.emb.hin2vec.Hin2vec method)
(cogdl.models.emb.hope.HOPE method)
(cogdl.models.emb.line.LINE method)
(cogdl.models.emb.metapath2vec.Metapath2vec method)
(cogdl.models.emb.netmf.NetMF method)
(cogdl.models.emb.netsmf.NetSMF method)
(cogdl.models.emb.node2vec.Node2vec method)
(cogdl.models.emb.prone.ProNE method)
(cogdl.models.emb.pte.PTE method)
(cogdl.models.emb.sdne.SDNE method)
(cogdl.models.emb.spectral.Spectral method)
(cogdl.models.nn.dgl_gcc.GCC method)
(cogdl.tasks.attributed_graph_clustering.AttributedGraphClustering method)
(cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.graph_classification.GraphClassification method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification method)
(cogdl.tasks.link_prediction.GNNHomoLinkPrediction method)
(cogdl.tasks.link_prediction.HomoLinkPrediction method)
(cogdl.tasks.link_prediction.KGLinkPrediction method)
(cogdl.tasks.link_prediction.LinkPrediction method)
(cogdl.tasks.link_prediction.TripleLinkPrediction method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification method)
(cogdl.tasks.node_classification.NodeClassification method)
(cogdl.tasks.pretrain.PretrainTask method)
(cogdl.tasks.similarity_search.SimilaritySearch method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
(in module cogdl.experiments)
train_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
train_test_edge_split() (cogdl.tasks.link_prediction.GNNHomoLinkPrediction static method)
TrainDataset (class in cogdl.datasets.kg_data)
TransE (class in cogdl.models.emb.transe)
TripleLinkPrediction (class in cogdl.tasks.link_prediction)
try_import_dataset() (in module cogdl.datasets)
try_import_model() (in module cogdl.models)
TUDataset (class in cogdl.datasets.tu_data)
TwitterDataset (class in cogdl.datasets.gatne)
U
uniform_node_feature() (in module cogdl.tasks.graph_classification)
unsup_forward() (cogdl.models.nn.infograph.InfoGraph method)
unsup_loss() (cogdl.models.nn.infograph.InfoGraph method)
unsup_sup_loss() (cogdl.models.nn.infograph.InfoGraph method)
UnsupervisedGAT (class in cogdl.layers.gcc_module)
UnsupervisedGIN (class in cogdl.layers.gcc_module)
UnsupervisedGraphClassification (class in cogdl.tasks.unsupervised_graph_classification)
UnsupervisedMPNN (class in cogdl.layers.gcc_module)
UnsupervisedNodeClassification (class in cogdl.tasks.unsupervised_node_classification)
untar() (in module cogdl.utils.utils)
update() (cogdl.layers.gpt_gnn_module.HGTConv method)
update_node() (cogdl.layers.gpt_gnn_module.Graph method)
url (cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.gcc_data.GCCDataset attribute)
(cogdl.datasets.kg_data.FB13SDatset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
(cogdl.datasets.tu_data.TUDataset attribute)
USAAirportDataset (class in cogdl.datasets.gcc_data)
V
valid_start_idx (cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
variant_args_generator() (in module cogdl.experiments)
W
walk() (cogdl.utils.sampling.RandomWalker method)
WikipediaDataset (class in cogdl.datasets.matlab_matrix)
wl_iterations() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
WN18Datset (class in cogdl.datasets.kg_data)
WN18RRDataset (class in cogdl.datasets.kg_data)
Y
YouTubeDataset (class in cogdl.datasets.gatne)
YoutubeNEDataset (class in cogdl.datasets.matlab_matrix)
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