CogDL
0.1.2
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API Reference
CogDL
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__call__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
(cogdl.datasets.pyg_strategies_data.ChemExtractSubstructureContextPair method)
(cogdl.datasets.pyg_strategies_data.ExtractSubstructureContextPair method)
(cogdl.datasets.pyg_strategies_data.MaskAtom method)
(cogdl.datasets.pyg_strategies_data.MaskEdge method)
(cogdl.datasets.pyg_strategies_data.NegativeEdge method)
(cogdl.layers.prone_module.ProNE method)
__contains__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
__getitem__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
(cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.kg_data.TestDataset method)
(cogdl.datasets.kg_data.TrainDataset method)
(cogdl.datasets.pyg.ENZYMES method)
(cogdl.models.nn.dgl_gcc.NodeClassificationDataset method)
__inc__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
__iter__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
__len__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
(cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.kg_data.TestDataset method)
(cogdl.datasets.kg_data.TrainDataset method)
(cogdl.models.nn.dgl_gcc.NodeClassificationDataset method)
__next__() (cogdl.datasets.kg_data.BidirectionalOneShotIterator method)
__repr__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
(cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.pyg_strategies_data.ChemExtractSubstructureContextPair method)
(cogdl.datasets.pyg_strategies_data.ExtractSubstructureContextPair method)
(cogdl.datasets.pyg_strategies_data.MaskAtom method)
(cogdl.layers.gpt_gnn_module.Classifier method)
(cogdl.layers.gpt_gnn_module.HGTConv method)
(cogdl.layers.gpt_gnn_module.Matcher method)
(cogdl.layers.maggregator.MeanAggregator method)
(cogdl.layers.MeanAggregator method)
(cogdl.models.nn.asgcn.GraphConvolution method)
(cogdl.models.nn.fastgcn.GraphConvolution method)
(cogdl.models.nn.gat.SpGraphAttentionLayer method)
(cogdl.models.nn.gcn.GraphConvolution method)
(cogdl.models.nn.pyg_grand.MLPLayer method)
__setitem__() (cogdl.data.Data method)
(cogdl.data.data.Data method)
_add_undirected_graph_positional_embedding() (in module cogdl.models.nn.dgl_gcc)
_approximate_deepwalk_matrix() (cogdl.models.emb.netmf.NetMF method)
_approximate_normalized_laplacian() (cogdl.models.emb.netmf.NetMF method)
_chebyshev_gaussian() (cogdl.models.emb.prone.ProNE method)
_compute_deepwalk_matrix() (cogdl.models.emb.netmf.NetMF method)
_convert_idx() (cogdl.models.nn.dgl_gcc.GraphClassificationDataset method)
(cogdl.models.nn.dgl_gcc.NodeClassificationDataset method)
_create_dgl_graph() (cogdl.models.nn.dgl_gcc.NodeClassificationDataset method)
_deepwalk_filter() (cogdl.models.emb.netmf.NetMF method)
_download() (cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
_evaluate() (cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
_forward_unimplemented() (cogdl.models.base_model.BaseModel method)
(cogdl.models.BaseModel method)
_generate_adj() (cogdl.models.nn.fastgcn.FastGCN method)
_get_alias_edge() (cogdl.models.emb.node2vec.Node2vec method)
_get_embedding() (cogdl.models.emb.grarep.GraRep method)
(cogdl.models.emb.hope.HOPE method)
_get_embedding_dense() (cogdl.models.emb.prone.ProNE method)
_get_embedding_rand() (cogdl.models.emb.netsmf.NetSMF method)
(cogdl.models.emb.prone.ProNE method)
_kfold_train() (cogdl.tasks.graph_classification.GraphClassification method)
_loss() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
_node2vec_walk() (cogdl.models.emb.node2vec.Node2vec method)
_path_sampling() (cogdl.models.emb.netsmf.NetSMF method)
_pre_factorization() (cogdl.models.emb.prone.ProNE method)
_preprocess_transition_probs() (cogdl.models.emb.node2vec.Node2vec method)
_process() (cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
_random_walk_matrix() (cogdl.models.emb.netsmf.NetSMF method)
_regularization() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
_rwr_trace_to_dgl_graph() (in module cogdl.models.nn.dgl_gcc)
_sample_one_layer() (cogdl.models.nn.asgcn.ASGCN method)
(cogdl.models.nn.fastgcn.FastGCN method)
_simulate_walks() (cogdl.models.emb.deepwalk.DeepWalk method)
(cogdl.models.emb.hin2vec.RWgraph method)
(cogdl.models.emb.metapath2vec.Metapath2vec method)
(cogdl.models.emb.node2vec.Node2vec method)
_test_step() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.tasks.graph_classification.GraphClassification method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification method)
(cogdl.tasks.link_prediction.KGLinkPrediction method)
(cogdl.tasks.node_classification.NodeClassification method)
(cogdl.tasks.node_classification_sampling.NodeClassificationSampling method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
(cogdl.trainers.sampled_trainer.SAINTTrainer method)
_train() (cogdl.tasks.graph_classification.GraphClassification method)
_train_line() (cogdl.models.emb.line.LINE method)
(cogdl.models.emb.pte.PTE method)
_train_step() (cogdl.layers.strategies_layers.ContextPredictTrainer method)
(cogdl.layers.strategies_layers.Finetuner method)
(cogdl.layers.strategies_layers.InfoMaxTrainer method)
(cogdl.layers.strategies_layers.MaskTrainer method)
(cogdl.layers.strategies_layers.SupervisedTrainer method)
(cogdl.tasks.graph_classification.GraphClassification method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification method)
(cogdl.tasks.link_prediction.KGLinkPrediction method)
(cogdl.tasks.node_classification.NodeClassification method)
(cogdl.tasks.node_classification_sampling.NodeClassificationSampling method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
(cogdl.trainers.sampled_trainer.SAINTTrainer method)
_update() (cogdl.models.emb.line.LINE method)
(cogdl.models.emb.pte.PTE method)
_walk() (cogdl.models.emb.deepwalk.DeepWalk method)
(cogdl.models.emb.hin2vec.RWgraph method)
(cogdl.models.emb.metapath2vec.Metapath2vec method)
A
ACM_GTNDataset (class in cogdl.datasets.gtn_data)
ACM_HANDataset (class in cogdl.datasets.han_data)
act_attention() (in module cogdl.layers.srgcn_module)
act_map() (in module cogdl.layers.srgcn_module)
act_normalization() (in module cogdl.layers.srgcn_module)
add_args() (cogdl.layers.strategies_layers.ContextPredictTrainer static method)
(cogdl.layers.strategies_layers.Finetuner static method)
(cogdl.layers.strategies_layers.InfoMaxTrainer static method)
(cogdl.layers.strategies_layers.MaskTrainer static method)
(cogdl.layers.strategies_layers.SupervisedTrainer static method)
(cogdl.models.base_model.BaseModel static method)
(cogdl.models.BaseModel static method)
(cogdl.models.emb.deepwalk.DeepWalk static method)
(cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.dngr.DNGR static method)
(cogdl.models.emb.gatne.GATNE static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
(cogdl.models.emb.grarep.GraRep static method)
(cogdl.models.emb.hin2vec.Hin2vec static method)
(cogdl.models.emb.hope.HOPE static method)
(cogdl.models.emb.knowledge_base.KGEModel static method)
(cogdl.models.emb.line.LINE static method)
(cogdl.models.emb.metapath2vec.Metapath2vec static method)
(cogdl.models.emb.netmf.NetMF static method)
(cogdl.models.emb.netsmf.NetSMF static method)
(cogdl.models.emb.node2vec.Node2vec static method)
(cogdl.models.emb.prone.ProNE static method)
(cogdl.models.emb.pte.PTE static method)
(cogdl.models.emb.sdne.SDNE static method)
(cogdl.models.emb.spectral.Spectral static method)
(cogdl.models.nn.asgcn.ASGCN static method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN static method)
(cogdl.models.nn.dgi.DGI static method)
(cogdl.models.nn.dgl_gcc.GCC static method)
(cogdl.models.nn.disengcn.DisenGCN static method)
(cogdl.models.nn.fastgcn.FastGCN static method)
(cogdl.models.nn.gat.PetarVSpGAT static method)
(cogdl.models.nn.gcn.TKipfGCN static method)
(cogdl.models.nn.gcnii.GCNII static method)
(cogdl.models.nn.graphsage.Graphsage static method)
(cogdl.models.nn.mixhop.MixHop static method)
(cogdl.models.nn.mlp.MLP static method)
(cogdl.models.nn.mvgrl.MVGRL static method)
(cogdl.models.nn.patchy_san.PatchySAN static method)
(cogdl.models.nn.pyg_cheb.Chebyshev static method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN static method)
(cogdl.models.nn.pyg_dgcnn.DGCNN static method)
(cogdl.models.nn.pyg_diffpool.DiffPool static method)
(cogdl.models.nn.pyg_drgat.DrGAT static method)
(cogdl.models.nn.pyg_drgcn.DrGCN static method)
(cogdl.models.nn.pyg_gat.GAT static method)
(cogdl.models.nn.pyg_gcn.GCN static method)
(cogdl.models.nn.pyg_gcnmix.GCNMix static method)
(cogdl.models.nn.pyg_gin.GIN static method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.nn.pyg_grand.Grand static method)
(cogdl.models.nn.pyg_gtn.GTN static method)
(cogdl.models.nn.pyg_han.HAN static method)
(cogdl.models.nn.pyg_infograph.InfoGraph static method)
(cogdl.models.nn.pyg_infomax.Infomax static method)
(cogdl.models.nn.pyg_sortpool.SortPool static method)
(cogdl.models.nn.pyg_srgcn.SRGCN static method)
(cogdl.models.nn.pyg_stpgnn.stpgnn static method)
(cogdl.models.nn.pyg_unet.UNet static method)
(cogdl.models.nn.pyg_unsup_graphsage.Graphsage static method)
(cogdl.models.nn.rgcn.LinkPredictRGCN static method)
(cogdl.tasks.base_task.BaseTask static method)
(cogdl.tasks.BaseTask static method)
(cogdl.tasks.graph_classification.GraphClassification static method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification static method)
(cogdl.tasks.link_prediction.LinkPrediction static method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction static method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification static method)
(cogdl.tasks.node_classification.NodeClassification static method)
(cogdl.tasks.node_classification_sampling.NodeClassificationSampling static method)
(cogdl.tasks.pretrain.PretrainTask static method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification static method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification static method)
add_dataset_args() (in module cogdl.options)
add_edge() (cogdl.layers.gpt_gnn_module.Graph method)
add_model_args() (in module cogdl.options)
add_node() (cogdl.layers.gpt_gnn_module.Graph method)
add_remaining_self_loops() (in module cogdl.utils)
add_reverse_edges() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
add_self_loops() (in module cogdl.utils)
add_task_args() (in module cogdl.options)
adj_pow_x() (cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.MixHopLayer method)
after_pooling_forward() (cogdl.models.nn.pyg_diffpool.DiffPool method)
aggr() (cogdl.layers.strategies_layers.GINConv method)
alias_draw() (in module cogdl.models)
alias_setup() (in module cogdl.models)
AmazonDataset (class in cogdl.datasets.gatne)
apply() (cogdl.data.Data method)
(cogdl.data.data.Data method)
apply_to_device() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
ApplyNodeFunc (class in cogdl.layers.gcc_module)
ArgClass (class in cogdl.utils)
args (in module cogdl.utils)
args_print() (in module cogdl.layers.gpt_gnn_module)
ASGCN (class in cogdl.models.nn.asgcn)
assemble_neighbor() (in module cogdl.models.nn.patchy_san)
AttentionLayer (class in cogdl.models.nn.pyg_han)
AvgReadout (class in cogdl.models.nn.dgi)
B
BACEDataset (class in cogdl.datasets.pyg_strategies_data)
backward() (cogdl.models.nn.gat.SpecialSpmmFunction static method)
BaseGNNMix (class in cogdl.models.nn.pyg_gcnmix)
BaseModel (class in cogdl.models)
(class in cogdl.models.base_model)
BasesRelEmbLayer (class in cogdl.models.nn.compgcn)
BaseTask (class in cogdl.tasks)
(class in cogdl.tasks.base_task)
BaseTrainer (class in cogdl.trainers.base_trainer)
basis_forward() (cogdl.models.nn.rgcn.RGCNLayer method)
Batch (class in cogdl.data)
(class in cogdl.data.batch)
batch_mean_pooling() (in module cogdl.utils)
batch_sum_pooling() (in module cogdl.utils)
BatchAE (class in cogdl.datasets.pyg_strategies_data)
BatchedDiffPool (class in cogdl.models.nn.pyg_diffpool)
BatchedDiffPoolLayer (class in cogdl.models.nn.pyg_diffpool)
BatchedGraphSAGE (class in cogdl.models.nn.pyg_diffpool)
batcher() (in module cogdl.models.nn.dgl_gcc)
BatchFinetune (class in cogdl.datasets.pyg_strategies_data)
BatchMasking (class in cogdl.datasets.pyg_strategies_data)
BatchSubstructContext (class in cogdl.datasets.pyg_strategies_data)
BBBPDataset (class in cogdl.datasets.pyg_strategies_data)
bdd_forward() (cogdl.models.nn.rgcn.RGCNLayer method)
BidirectionalOneShotIterator (class in cogdl.datasets.kg_data)
BioDataset (class in cogdl.datasets.pyg_strategies_data)
BlogcatalogDataset (class in cogdl.datasets.matlab_matrix)
build_args_from_dict() (in module cogdl.utils)
build_dataset() (in module cogdl.datasets)
build_dataset_from_name() (in module cogdl.datasets)
build_model() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.models.nn.patchy_san.PatchySAN method)
(in module cogdl.models)
build_model_from_args() (cogdl.models.base_model.BaseModel class method)
(cogdl.models.BaseModel class method)
(cogdl.models.emb.deepwalk.DeepWalk class method)
(cogdl.models.emb.dgk.DeepGraphKernel class method)
(cogdl.models.emb.dngr.DNGR class method)
(cogdl.models.emb.gatne.GATNE class method)
(cogdl.models.emb.graph2vec.Graph2Vec class method)
(cogdl.models.emb.grarep.GraRep class method)
(cogdl.models.emb.hin2vec.Hin2vec class method)
(cogdl.models.emb.hope.HOPE class method)
(cogdl.models.emb.knowledge_base.KGEModel class method)
(cogdl.models.emb.line.LINE class method)
(cogdl.models.emb.metapath2vec.Metapath2vec class method)
(cogdl.models.emb.netmf.NetMF class method)
(cogdl.models.emb.netsmf.NetSMF class method)
(cogdl.models.emb.node2vec.Node2vec class method)
(cogdl.models.emb.prone.ProNE class method)
(cogdl.models.emb.pte.PTE class method)
(cogdl.models.emb.sdne.SDNE class method)
(cogdl.models.emb.spectral.Spectral class method)
(cogdl.models.nn.asgcn.ASGCN class method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN class method)
(cogdl.models.nn.dgi.DGI class method)
(cogdl.models.nn.dgl_gcc.GCC class method)
(cogdl.models.nn.disengcn.DisenGCN class method)
(cogdl.models.nn.fastgcn.FastGCN class method)
(cogdl.models.nn.gat.PetarVSpGAT class method)
(cogdl.models.nn.gcn.TKipfGCN class method)
(cogdl.models.nn.gcnii.GCNII class method)
(cogdl.models.nn.graphsage.Graphsage class method)
(cogdl.models.nn.mixhop.MixHop class method)
(cogdl.models.nn.mlp.MLP class method)
(cogdl.models.nn.mvgrl.MVGRL class method)
(cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.pyg_cheb.Chebyshev class method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_diffpool.DiffPool class method)
(cogdl.models.nn.pyg_drgat.DrGAT class method)
(cogdl.models.nn.pyg_drgcn.DrGCN class method)
(cogdl.models.nn.pyg_gat.GAT class method)
(cogdl.models.nn.pyg_gcn.GCN class method)
(cogdl.models.nn.pyg_gcnmix.GCNMix class method)
(cogdl.models.nn.pyg_gin.GIN class method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN class method)
(cogdl.models.nn.pyg_grand.Grand class method)
(cogdl.models.nn.pyg_gtn.GTN class method)
(cogdl.models.nn.pyg_han.HAN class method)
(cogdl.models.nn.pyg_infograph.InfoGraph class method)
(cogdl.models.nn.pyg_infomax.Infomax class method)
(cogdl.models.nn.pyg_sortpool.SortPool class method)
(cogdl.models.nn.pyg_srgcn.SRGCN class method)
(cogdl.models.nn.pyg_stpgnn.stpgnn class method)
(cogdl.models.nn.pyg_unet.UNet class method)
(cogdl.models.nn.pyg_unsup_graphsage.Graphsage class method)
(cogdl.models.nn.rgcn.LinkPredictRGCN class method)
build_task() (in module cogdl.tasks)
build_trainer_from_args() (cogdl.trainers.base_trainer.BaseTrainer class method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer class method)
(cogdl.trainers.gpt_gnn_trainer.GPT_GNNHomogeneousTrainer class method)
(cogdl.trainers.sampled_trainer.SAINTTrainer static method)
C
cal_mrr() (in module cogdl.layers.link_prediction_module)
cat_dim() (cogdl.data.Data method)
(cogdl.data.data.Data method)
(cogdl.datasets.pyg_strategies_data.BatchAE method)
(cogdl.datasets.pyg_strategies_data.BatchSubstructContext method)
ccorr() (in module cogdl.models.nn.compgcn)
Chebyshev (class in cogdl.models.nn.pyg_cheb)
chebyshev() (cogdl.layers.prone_module.HeatKernelApproximation method)
ChemExtractSubstructureContextPair (class in cogdl.datasets.pyg_strategies_data)
CiteSeerDataset (class in cogdl.datasets.pyg)
Classifier (class in cogdl.layers.gpt_gnn_module)
clone() (cogdl.data.Data method)
(cogdl.data.data.Data method)
cmp() (in module cogdl.models.nn.patchy_san)
cogdl
module
cogdl.data
module
cogdl.data.batch
module
cogdl.data.data
module
cogdl.data.dataloader
module
cogdl.data.dataset
module
cogdl.data.download
module
cogdl.data.extract
module
cogdl.data.makedirs
module
cogdl.data.sampler
module
cogdl.datasets
module
cogdl.datasets.dgl_data
module
cogdl.datasets.gatne
module
cogdl.datasets.gcc_data
module
cogdl.datasets.gtn_data
module
cogdl.datasets.han_data
module
cogdl.datasets.kg_data
module
cogdl.datasets.matlab_matrix
module
cogdl.datasets.pyg
module
cogdl.datasets.pyg_ogb
module
cogdl.datasets.pyg_strategies_data
module
cogdl.layers
module
cogdl.layers.gcc_module
module
cogdl.layers.gpt_gnn_module
module
cogdl.layers.link_prediction_module
module
cogdl.layers.maggregator
module
cogdl.layers.mixhop_layer
module
cogdl.layers.prone_module
module
cogdl.layers.se_layer
module
cogdl.layers.srgcn_module
module
cogdl.layers.strategies_layers
module
cogdl.models
module
cogdl.models.base_model
module
cogdl.models.emb
module
cogdl.models.emb.complex
module
cogdl.models.emb.deepwalk
module
cogdl.models.emb.dgk
module
cogdl.models.emb.distmult
module
cogdl.models.emb.dngr
module
cogdl.models.emb.gatne
module
cogdl.models.emb.graph2vec
module
cogdl.models.emb.grarep
module
cogdl.models.emb.hin2vec
module
cogdl.models.emb.hope
module
cogdl.models.emb.knowledge_base
module
cogdl.models.emb.line
module
cogdl.models.emb.metapath2vec
module
cogdl.models.emb.netmf
module
cogdl.models.emb.netsmf
module
cogdl.models.emb.node2vec
module
cogdl.models.emb.prone
module
cogdl.models.emb.pte
module
cogdl.models.emb.rotate
module
cogdl.models.emb.sdne
module
cogdl.models.emb.spectral
module
cogdl.models.emb.transe
module
cogdl.models.nn
module
cogdl.models.nn.asgcn
module
cogdl.models.nn.compgcn
module
cogdl.models.nn.dgi
module
cogdl.models.nn.dgl_gcc
module
cogdl.models.nn.disengcn
module
cogdl.models.nn.fastgcn
module
cogdl.models.nn.gat
module
cogdl.models.nn.gcn
module
cogdl.models.nn.gcnii
module
cogdl.models.nn.graphsage
module
cogdl.models.nn.mixhop
module
cogdl.models.nn.mlp
module
cogdl.models.nn.mvgrl
module
cogdl.models.nn.patchy_san
module
cogdl.models.nn.pyg_cheb
module
cogdl.models.nn.pyg_deepergcn
module
cogdl.models.nn.pyg_dgcnn
module
cogdl.models.nn.pyg_diffpool
module
cogdl.models.nn.pyg_drgat
module
cogdl.models.nn.pyg_drgcn
module
cogdl.models.nn.pyg_gat
module
cogdl.models.nn.pyg_gcn
module
cogdl.models.nn.pyg_gcnmix
module
cogdl.models.nn.pyg_gin
module
cogdl.models.nn.pyg_gpt_gnn
module
cogdl.models.nn.pyg_grand
module
cogdl.models.nn.pyg_gtn
module
cogdl.models.nn.pyg_han
module
cogdl.models.nn.pyg_infograph
module
cogdl.models.nn.pyg_infomax
module
cogdl.models.nn.pyg_sortpool
module
cogdl.models.nn.pyg_srgcn
module
cogdl.models.nn.pyg_stpgnn
module
cogdl.models.nn.pyg_unet
module
cogdl.models.nn.pyg_unsup_graphsage
module
cogdl.models.nn.rgcn
module
cogdl.models.supervised_model
module
cogdl.options
module
cogdl.tasks
module
cogdl.tasks.base_task
module
cogdl.tasks.graph_classification
module
cogdl.tasks.heterogeneous_node_classification
module
cogdl.tasks.link_prediction
module
cogdl.tasks.multiplex_link_prediction
module
cogdl.tasks.multiplex_node_classification
module
cogdl.tasks.node_classification
module
cogdl.tasks.node_classification_sampling
module
cogdl.tasks.pretrain
module
cogdl.tasks.unsupervised_graph_classification
module
cogdl.tasks.unsupervised_node_classification
module
cogdl.trainers
module
cogdl.trainers.base_trainer
module
cogdl.trainers.deepergcn_trainer
module
cogdl.trainers.gpt_gnn_trainer
module
cogdl.trainers.sampled_trainer
module
cogdl.trainers.supervised_trainer
module
cogdl.trainers.unsupervised_trainer
module
cogdl.utils
module
CollabDataset (class in cogdl.datasets.dgl_data)
(class in cogdl.datasets.pyg)
collate_fn() (cogdl.datasets.kg_data.TestDataset static method)
(cogdl.datasets.kg_data.TrainDataset static method)
ColumnUniform (class in cogdl.layers.srgcn_module)
com_mult() (in module cogdl.models.nn.compgcn)
CompGCN (class in cogdl.models.nn.compgcn)
CompGCNLayer (class in cogdl.models.nn.compgcn)
ComplEx (class in cogdl.models.emb.complex)
compute_adjlist() (cogdl.models.nn.asgcn.ASGCN method)
compute_ppr() (in module cogdl.models.nn.mvgrl)
concat() (cogdl.layers.link_prediction_module.ConvELayer method)
conj() (in module cogdl.models.nn.compgcn)
consis_loss() (cogdl.models.nn.pyg_grand.Grand method)
ContextPredictTrainer (class in cogdl.layers.strategies_layers)
contiguous() (cogdl.data.Data method)
(cogdl.data.data.Data method)
ConvELayer (class in cogdl.layers.link_prediction_module)
CoraDataset (class in cogdl.datasets.pyg)
corruption() (in module cogdl.models.nn.pyg_infomax)
count_frequency() (cogdl.datasets.kg_data.TrainDataset static method)
cuda() (cogdl.data.Data method)
(cogdl.data.data.Data method)
cumsum() (cogdl.data.Batch method)
(cogdl.data.batch.Batch method)
(cogdl.datasets.pyg_strategies_data.BatchMasking method)
(cogdl.datasets.pyg_strategies_data.BatchSubstructContext method)
cycle_index() (in module cogdl.utils)
D
Data (class in cogdl.data)
(class in cogdl.data.data)
data_preparation() (cogdl.models.emb.hin2vec.RWgraph method)
DataListLoader (class in cogdl.data)
(class in cogdl.data.dataloader)
DataLoader (class in cogdl.data)
(class in cogdl.data.dataloader)
DataLoaderAE (class in cogdl.datasets.pyg_strategies_data)
DataLoaderFinetune (class in cogdl.datasets.pyg_strategies_data)
DataLoaderMasking (class in cogdl.datasets.pyg_strategies_data)
DataLoaderSubstructContext (class in cogdl.datasets.pyg_strategies_data)
Dataset (class in cogdl.data)
(class in cogdl.data.dataset)
(class in cogdl.datasets)
dataset_name (in module cogdl.datasets)
DATASET_REGISTRY (in module cogdl.datasets)
DBLP_GTNDataset (class in cogdl.datasets.gtn_data)
DBLP_HANDataset (class in cogdl.datasets.han_data)
dcg_at_k() (in module cogdl.layers.gpt_gnn_module)
DeeperGCN (class in cogdl.models.nn.pyg_deepergcn)
DeeperGCNTrainer (class in cogdl.trainers.deepergcn_trainer)
DeepGCNLayer (class in cogdl.models.nn.pyg_deepergcn)
DeepGraphKernel (class in cogdl.models.emb.dgk)
DeepWalk (class in cogdl.models.emb.deepwalk)
defaultDictDict() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictInt() (in module cogdl.layers.gpt_gnn_module)
defaultDictList() (in module cogdl.layers.gpt_gnn_module)
DenseDataLoader (class in cogdl.data)
(class in cogdl.data.dataloader)
DGCNN (class in cogdl.models.nn.pyg_dgcnn)
DGI (class in cogdl.models.nn.dgi)
DGIModel (class in cogdl.models.nn.dgi)
dgl_import (in module cogdl.datasets)
(in module cogdl.models)
DiffPool (class in cogdl.models.nn.pyg_diffpool)
Discriminator (class in cogdl.layers.strategies_layers)
(class in cogdl.models.nn.dgi)
(class in cogdl.models.nn.mvgrl)
DisenGCN (class in cogdl.models.nn.disengcn)
DisenGCNLayer (class in cogdl.models.nn.disengcn)
DistMult (class in cogdl.models.emb.distmult)
DistMultLayer (class in cogdl.layers.link_prediction_module)
divide_data() (in module cogdl.tasks.link_prediction)
DNGR (class in cogdl.models.emb.dngr)
DNGR_layer (class in cogdl.models.emb.dngr)
download() (cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.pyg_strategies_data.BACEDataset method)
(cogdl.datasets.pyg_strategies_data.BBBPDataset method)
(cogdl.datasets.pyg_strategies_data.BioDataset method)
(cogdl.datasets.pyg_strategies_data.MoleculeDataset method)
download_url() (in module cogdl.data)
(in module cogdl.data.download)
DrGAT (class in cogdl.models.nn.pyg_drgat)
DrGCN (class in cogdl.models.nn.pyg_drgcn)
dropNode() (cogdl.models.nn.pyg_grand.Grand method)
E
edge_attention() (cogdl.layers.gcc_module.GATLayer method)
edge_softmax() (in module cogdl.utils)
EdgeAttention (class in cogdl.layers.srgcn_module)
Edgelist (class in cogdl.datasets.gcc_data)
EdgeSampler (class in cogdl.data.sampler)
eigen_decomposision() (in module cogdl.models.nn.dgl_gcc)
embed() (cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.mvgrl.Model method)
(cogdl.models.nn.pyg_unsup_graphsage.SAGE method)
Encoder (class in cogdl.models.nn.pyg_infograph)
(class in cogdl.models.nn.pyg_infomax)
enhance_emb() (cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
EntropyLoss (class in cogdl.models.nn.pyg_diffpool)
ENZYMES (class in cogdl.datasets.pyg)
estimate() (cogdl.data.sampler.SAINTSampler method)
evaluate() (cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.pyg_han.HAN method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(cogdl.trainers.gpt_gnn_trainer.GPT_GNNHeterogeneousTrainer method)
(in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
extract_bz2() (in module cogdl.data)
(in module cogdl.data.extract)
extract_gz() (in module cogdl.data)
(in module cogdl.data.extract)
extract_subgraph() (cogdl.data.sampler.SAINTSampler method)
extract_tar() (in module cogdl.data)
(in module cogdl.data.extract)
extract_zip() (in module cogdl.data)
(in module cogdl.data.extract)
ExtractSubstructureContextPair (class in cogdl.datasets.pyg_strategies_data)
F
FastGCN (class in cogdl.models.nn.fastgcn)
FB13Datset (class in cogdl.datasets.kg_data)
FB13SDatset (class in cogdl.datasets.kg_data)
FB15k237Datset (class in cogdl.datasets.kg_data)
FB15kDatset (class in cogdl.datasets.kg_data)
feat_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
feature_extractor() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
feature_OAG() (in module cogdl.layers.gpt_gnn_module)
feature_reddit() (in module cogdl.layers.gpt_gnn_module)
FF (class in cogdl.models.nn.pyg_infograph)
files_exist() (in module cogdl.data.dataset)
Finetuner (class in cogdl.layers.strategies_layers)
fit() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.layers.strategies_layers.Pretrainer method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
(cogdl.trainers.gpt_gnn_trainer.GPT_GNNHeterogeneousTrainer method)
(cogdl.trainers.gpt_gnn_trainer.GPT_GNNHomogeneousTrainer method)
(cogdl.trainers.sampled_trainer.SAINTTrainer method)
(cogdl.trainers.sampled_trainer.SampledTrainer method)
(cogdl.trainers.supervised_trainer.SupervisedHeterogeneousNodeClassificationTrainer method)
(cogdl.trainers.supervised_trainer.SupervisedHomogeneousNodeClassificationTrainer method)
(cogdl.trainers.supervised_trainer.SupervisedTrainer method)
FlickrDataset (class in cogdl.datasets.matlab_matrix)
forward() (cogdl.layers.gcc_module.ApplyNodeFunc method)
(cogdl.layers.gcc_module.GATLayer method)
(cogdl.layers.gcc_module.GraphEncoder method)
(cogdl.layers.gcc_module.MLP method)
(cogdl.layers.gcc_module.SELayer method)
(cogdl.layers.gcc_module.UnsupervisedGAT method)
(cogdl.layers.gcc_module.UnsupervisedGIN method)
(cogdl.layers.gcc_module.UnsupervisedMPNN method)
(cogdl.layers.gpt_gnn_module.Classifier method)
(cogdl.layers.gpt_gnn_module.GeneralConv method)
(cogdl.layers.gpt_gnn_module.GNN method)
(cogdl.layers.gpt_gnn_module.GPT_GNN method)
(cogdl.layers.gpt_gnn_module.HGTConv method)
(cogdl.layers.gpt_gnn_module.Matcher method)
(cogdl.layers.gpt_gnn_module.RelTemporalEncoding method)
(cogdl.layers.gpt_gnn_module.RNNModel method)
(cogdl.layers.link_prediction_module.ConvELayer method)
(cogdl.layers.link_prediction_module.DistMultLayer method)
(cogdl.layers.link_prediction_module.GNNLinkPredict method)
(cogdl.layers.maggregator.MeanAggregator method)
(cogdl.layers.MeanAggregator method)
(cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.MixHopLayer method)
(cogdl.layers.se_layer.SELayer method)
(cogdl.layers.SELayer method)
(cogdl.layers.srgcn_module.ColumnUniform method)
(cogdl.layers.srgcn_module.EdgeAttention method)
(cogdl.layers.srgcn_module.HeatKernel method)
(cogdl.layers.srgcn_module.Identity method)
(cogdl.layers.srgcn_module.NodeAttention method)
(cogdl.layers.srgcn_module.NormIdentity method)
(cogdl.layers.srgcn_module.PPR method)
(cogdl.layers.srgcn_module.RowSoftmax method)
(cogdl.layers.srgcn_module.RowUniform method)
(cogdl.layers.srgcn_module.SymmetryNorm method)
(cogdl.layers.strategies_layers.Discriminator method)
(cogdl.layers.strategies_layers.GINConv method)
(cogdl.layers.strategies_layers.GNN method)
(cogdl.layers.strategies_layers.GNNPred method)
(cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.dngr.DNGR_layer method)
(cogdl.models.emb.gatne.GATNEModel method)
(cogdl.models.emb.gatne.NSLoss method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
(cogdl.models.emb.hin2vec.Hin2vec_layer method)
(cogdl.models.emb.knowledge_base.KGEModel method)
(cogdl.models.emb.sdne.SDNE_layer method)
(cogdl.models.nn.asgcn.ASGCN method)
(cogdl.models.nn.asgcn.GraphConvolution method)
(cogdl.models.nn.compgcn.BasesRelEmbLayer method)
(cogdl.models.nn.compgcn.CompGCN method)
(cogdl.models.nn.compgcn.CompGCNLayer method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.dgi.AvgReadout method)
(cogdl.models.nn.dgi.DGIModel method)
(cogdl.models.nn.dgi.Discriminator method)
(cogdl.models.nn.dgi.GCN method)
(cogdl.models.nn.dgi.LogReg method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.disengcn.DisenGCNLayer method)
(cogdl.models.nn.fastgcn.FastGCN method)
(cogdl.models.nn.fastgcn.GraphConvolution method)
(cogdl.models.nn.gat.PetarVSpGAT method)
(cogdl.models.nn.gat.SpecialSpmm method)
(cogdl.models.nn.gat.SpecialSpmmFunction static method)
(cogdl.models.nn.gat.SpGraphAttentionLayer method)
(cogdl.models.nn.gcn.GraphConvolution method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.gcnii.GCNIILayer method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.graphsage.GraphSAGELayer method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.mvgrl.Discriminator method)
(cogdl.models.nn.mvgrl.Model method)
(cogdl.models.nn.patchy_san.PatchySAN method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN method)
(cogdl.models.nn.pyg_deepergcn.DeepGCNLayer method)
(cogdl.models.nn.pyg_deepergcn.GENConv method)
(cogdl.models.nn.pyg_dgcnn.DGCNN method)
(cogdl.models.nn.pyg_diffpool.BatchedDiffPool method)
(cogdl.models.nn.pyg_diffpool.BatchedDiffPoolLayer method)
(cogdl.models.nn.pyg_diffpool.BatchedGraphSAGE method)
(cogdl.models.nn.pyg_diffpool.DiffPool method)
(cogdl.models.nn.pyg_diffpool.EntropyLoss method)
(cogdl.models.nn.pyg_diffpool.GraphSAGE method)
(cogdl.models.nn.pyg_diffpool.LinkPredLoss method)
(cogdl.models.nn.pyg_drgat.DrGAT method)
(cogdl.models.nn.pyg_drgcn.DrGCN method)
(cogdl.models.nn.pyg_gat.GAT method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
(cogdl.models.nn.pyg_gcnmix.GCNConv method)
(cogdl.models.nn.pyg_gcnmix.GCNMix method)
(cogdl.models.nn.pyg_gin.GIN method)
(cogdl.models.nn.pyg_gin.GINLayer method)
(cogdl.models.nn.pyg_gin.GINMLP method)
(cogdl.models.nn.pyg_grand.Grand method)
(cogdl.models.nn.pyg_grand.MLPLayer method)
(cogdl.models.nn.pyg_gtn.GTConv method)
(cogdl.models.nn.pyg_gtn.GTLayer method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.pyg_han.AttentionLayer method)
(cogdl.models.nn.pyg_han.HAN method)
(cogdl.models.nn.pyg_han.HANLayer method)
(cogdl.models.nn.pyg_infograph.Encoder method)
(cogdl.models.nn.pyg_infograph.FF method)
(cogdl.models.nn.pyg_infograph.InfoGraph method)
(cogdl.models.nn.pyg_infograph.SUPEncoder method)
(cogdl.models.nn.pyg_infomax.Encoder method)
(cogdl.models.nn.pyg_infomax.Infomax method)
(cogdl.models.nn.pyg_sortpool.SortPool method)
(cogdl.models.nn.pyg_srgcn.NodeAdaptiveEncoder method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.pyg_srgcn.SrgcnHead method)
(cogdl.models.nn.pyg_srgcn.SrgcnSoftmaxHead method)
(cogdl.models.nn.pyg_unet.UNet method)
(cogdl.models.nn.pyg_unsup_graphsage.SAGE method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.nn.rgcn.RGCN method)
(cogdl.models.nn.rgcn.RGCNLayer method)
forward_aux() (cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
(cogdl.models.nn.pyg_gcnmix.GCNConv method)
forward_ema() (cogdl.models.nn.pyg_gcnmix.GCNMix method)
from_adjlist() (cogdl.models.nn.asgcn.ASGCN method)
from_data_list() (cogdl.data.Batch static method)
(cogdl.data.batch.Batch static method)
(cogdl.datasets.pyg_strategies_data.BatchAE static method)
(cogdl.datasets.pyg_strategies_data.BatchFinetune static method)
(cogdl.datasets.pyg_strategies_data.BatchMasking static method)
(cogdl.datasets.pyg_strategies_data.BatchSubstructContext static method)
from_dict() (cogdl.data.Data static method)
(cogdl.data.data.Data static method)
from_w2v() (cogdl.layers.gpt_gnn_module.RNNModel method)
G
GAT (class in cogdl.models.nn.pyg_gat)
GATLayer (class in cogdl.layers.gcc_module)
GATNE (class in cogdl.models.emb.gatne)
GatneDataset (class in cogdl.datasets.gatne)
GATNEModel (class in cogdl.models.emb.gatne)
Gaussian (class in cogdl.layers.prone_module)
GCC (class in cogdl.models.nn.dgl_gcc)
GCN (class in cogdl.models.nn.dgi)
(class in cogdl.models.nn.pyg_gcn)
GCNConv (class in cogdl.models.nn.pyg_gcnmix)
GCNII (class in cogdl.models.nn.gcnii)
GCNIILayer (class in cogdl.models.nn.gcnii)
GCNMix (class in cogdl.models.nn.pyg_gcnmix)
gen_node_pairs() (in module cogdl.tasks.link_prediction)
gen_subgraph() (cogdl.data.sampler.SAINTSampler method)
GENConv (class in cogdl.models.nn.pyg_deepergcn)
GeneralConv (class in cogdl.layers.gpt_gnn_module)
generate_data() (cogdl.tasks.graph_classification.GraphClassification method)
generate_pairs() (in module cogdl.models.emb.gatne)
generate_subgraphs() (in module cogdl.trainers.deepergcn_trainer)
generate_vocab() (in module cogdl.models.emb.gatne)
generate_walks() (in module cogdl.models.emb.gatne)
get() (cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.pyg_ogb.OGBGDataset method)
(cogdl.datasets.pyg_ogb.OGBNDataset method)
(cogdl.datasets.pyg_strategies_data.BACEDataset method)
(cogdl.datasets.pyg_strategies_data.BBBPDataset method)
(cogdl.datasets.pyg_strategies_data.MoleculeDataset method)
(cogdl.datasets.pyg_strategies_data.TestChemDataset method)
get_activation() (in module cogdl.utils)
get_batches() (cogdl.data.sampler.LayerSampler method)
(in module cogdl.models.emb.gatne)
(in module cogdl.tasks.node_classification_sampling)
get_cbow_pred() (cogdl.layers.strategies_layers.ContextPredictTrainer method)
get_current_consistency_weight() (in module cogdl.models.nn.pyg_gcnmix)
get_dataset() (cogdl.layers.strategies_layers.Pretrainer method)
get_degrees() (in module cogdl.utils)
get_denoised_matrix() (cogdl.models.emb.dngr.DNGR method)
get_display_data_parser() (in module cogdl.options)
get_download_data_parser() (in module cogdl.options)
get_edge_set() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
get_emb() (cogdl.models.emb.dngr.DNGR method)
(cogdl.models.emb.hin2vec.Hin2vec_layer method)
(cogdl.models.emb.sdne.SDNE_layer method)
get_embedding() (cogdl.trainers.unsupervised_trainer.UnsupervisedTrainer method)
get_embedding_dense() (in module cogdl.layers.prone_module)
get_filtered_rank() (in module cogdl.layers.link_prediction_module)
get_G_from_edges() (in module cogdl.models.emb.gatne)
get_loader() (cogdl.datasets.pyg_ogb.OGBGDataset method)
get_loss() (cogdl.models.nn.pyg_diffpool.BatchedDiffPool method)
(cogdl.models.nn.pyg_diffpool.BatchedDiffPoolLayer method)
get_meta_graph() (cogdl.layers.gpt_gnn_module.Graph method)
get_one_hot_label() (in module cogdl.models.nn.pyg_gcnmix)
get_optimizer() (cogdl.models.nn.gcnii.GCNII method)
get_param() (cogdl.models.nn.compgcn.CompGCNLayer method)
get_parser() (in module cogdl.options)
get_ppmi_matrix() (cogdl.models.emb.dngr.DNGR method)
get_rank() (in module cogdl.layers.link_prediction_module)
get_raw_rank() (in module cogdl.layers.link_prediction_module)
get_score() (cogdl.layers.link_prediction_module.GNNLinkPredict method)
(in module cogdl.tasks.link_prediction)
(in module cogdl.tasks.multiplex_link_prediction)
get_single_feature() (in module cogdl.models.nn.patchy_san)
get_skipgram_pred() (cogdl.layers.strategies_layers.ContextPredictTrainer method)
get_subgraph() (cogdl.data.sampler.SAINTSampler method)
get_trainer() (cogdl.models.base_model.BaseModel static method)
(cogdl.models.BaseModel static method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN static method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN static method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel static method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel static method)
get_training_parser() (in module cogdl.options)
get_true_head_and_tail() (cogdl.datasets.kg_data.TrainDataset static method)
get_types() (cogdl.layers.gpt_gnn_module.Graph method)
GIN (class in cogdl.models.nn.pyg_gin)
GINConv (class in cogdl.layers.strategies_layers)
GINLayer (class in cogdl.models.nn.pyg_gin)
GINMLP (class in cogdl.models.nn.pyg_gin)
GNN (class in cogdl.layers.gpt_gnn_module)
(class in cogdl.layers.strategies_layers)
GNNLinkPredict (class in cogdl.layers.link_prediction_module)
GNNPred (class in cogdl.layers.strategies_layers)
GPT_GNN (class in cogdl.layers.gpt_gnn_module)
(class in cogdl.models.nn.pyg_gpt_gnn)
GPT_GNNHeterogeneousTrainer (class in cogdl.trainers.gpt_gnn_trainer)
GPT_GNNHomogeneousTrainer (class in cogdl.trainers.gpt_gnn_trainer)
Grand (class in cogdl.models.nn.pyg_grand)
Graph (class in cogdl.layers.gpt_gnn_module)
Graph2Vec (class in cogdl.models.emb.graph2vec)
graph_data_obj_to_nx() (in module cogdl.datasets.pyg_strategies_data)
graph_data_obj_to_nx_simple() (in module cogdl.datasets.pyg_strategies_data)
graph_pool (in module cogdl.trainers.gpt_gnn_trainer)
GraphClassification (class in cogdl.tasks.graph_classification)
GraphClassificationDataset (class in cogdl.models.nn.dgl_gcc)
GraphConvolution (class in cogdl.models.nn.asgcn)
(class in cogdl.models.nn.fastgcn)
(class in cogdl.models.nn.gcn)
GraphEncoder (class in cogdl.layers.gcc_module)
Graphsage (class in cogdl.models.nn.graphsage)
GraphSAGE (class in cogdl.models.nn.pyg_diffpool)
Graphsage (class in cogdl.models.nn.pyg_unsup_graphsage)
GraphSAGELayer (class in cogdl.models.nn.graphsage)
GraRep (class in cogdl.models.emb.grarep)
GTConv (class in cogdl.models.nn.pyg_gtn)
GTLayer (class in cogdl.models.nn.pyg_gtn)
GTN (class in cogdl.models.nn.pyg_gtn)
GTNDataset (class in cogdl.datasets.gtn_data)
H
HAN (class in cogdl.models.nn.pyg_han)
HANDataset (class in cogdl.datasets.han_data)
HANLayer (class in cogdl.models.nn.pyg_han)
HeatKernel (class in cogdl.layers.prone_module)
(class in cogdl.layers.srgcn_module)
HeatKernelApproximation (class in cogdl.layers.prone_module)
HeterogeneousNodeClassification (class in cogdl.tasks.heterogeneous_node_classification)
HGTConv (class in cogdl.layers.gpt_gnn_module)
Hin2vec (class in cogdl.models.emb.hin2vec)
Hin2vec_layer (class in cogdl.models.emb.hin2vec)
HomoLinkPrediction (class in cogdl.tasks.link_prediction)
HOPE (class in cogdl.models.emb.hope)
I
Identity (class in cogdl.layers.srgcn_module)
IMDB_GTNDataset (class in cogdl.datasets.gtn_data)
IMDB_HANDataset (class in cogdl.datasets.han_data)
ImdbBinaryDataset (class in cogdl.datasets.dgl_data)
(class in cogdl.datasets.pyg)
ImdbMultiDataset (class in cogdl.datasets.dgl_data)
(class in cogdl.datasets.pyg)
InfoGraph (class in cogdl.models.nn.pyg_infograph)
Infomax (class in cogdl.models.nn.pyg_infomax)
InfoMaxTrainer (class in cogdl.layers.strategies_layers)
is_coalesced() (cogdl.data.Data method)
(cogdl.data.data.Data method)
K
keys() (cogdl.data.Data property)
(cogdl.data.data.Data property)
KGEModel (class in cogdl.models.emb.knowledge_base)
KGLinkPrediction (class in cogdl.tasks.link_prediction)
KnowledgeGraphDataset (class in cogdl.datasets.kg_data)
L
layer (in module cogdl.layers.mixhop_layer)
LayerSampler (class in cogdl.data.sampler)
LINE (class in cogdl.models.emb.line)
link_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
LinkPredictCompGCN (class in cogdl.models.nn.compgcn)
LinkPrediction (class in cogdl.tasks.link_prediction)
LinkPredictRGCN (class in cogdl.models.nn.rgcn)
LinkPredLoss (class in cogdl.models.nn.pyg_diffpool)
load_from_pretrained() (cogdl.layers.strategies_layers.GNNPred method)
load_gnn() (in module cogdl.layers.gpt_gnn_module)
log_metrics() (in module cogdl.tasks.link_prediction)
LogReg (class in cogdl.models.nn.dgi)
LogRegTrainer (class in cogdl.models.nn.dgi)
loss() (cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.gat.PetarVSpGAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN method)
(cogdl.models.nn.pyg_diffpool.DiffPool method)
(cogdl.models.nn.pyg_drgat.DrGAT method)
(cogdl.models.nn.pyg_drgcn.DrGCN method)
(cogdl.models.nn.pyg_gat.GAT method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
(cogdl.models.nn.pyg_gcnmix.GCNMix method)
(cogdl.models.nn.pyg_gin.GIN method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_grand.Grand method)
(cogdl.models.nn.pyg_gtn.GTN method)
(cogdl.models.nn.pyg_han.HAN method)
(cogdl.models.nn.pyg_infomax.Infomax method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.pyg_unet.UNet method)
(cogdl.models.nn.pyg_unsup_graphsage.SAGE method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.supervised_model.SupervisedHeterogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.models.supervised_model.SupervisedModel method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
M
makedirs() (in module cogdl.data.makedirs)
MaskAtom (class in cogdl.datasets.pyg_strategies_data)
MaskEdge (class in cogdl.datasets.pyg_strategies_data)
MaskTrainer (class in cogdl.layers.strategies_layers)
Matcher (class in cogdl.layers.gpt_gnn_module)
MatlabMatrix (class in cogdl.datasets.matlab_matrix)
maybe_log() (in module cogdl.data.extract)
mean_reciprocal_rank() (in module cogdl.layers.gpt_gnn_module)
MeanAggregator (class in cogdl.layers)
(class in cogdl.layers.maggregator)
message() (cogdl.layers.gpt_gnn_module.HGTConv method)
message_func() (cogdl.layers.gcc_module.GATLayer method)
message_norm() (cogdl.models.nn.pyg_deepergcn.GENConv method)
message_passing() (cogdl.models.nn.compgcn.CompGCNLayer method)
Metapath2vec (class in cogdl.models.emb.metapath2vec)
mi_loss() (cogdl.models.nn.pyg_infograph.InfoGraph static method)
mix_hidden_state() (in module cogdl.models.nn.pyg_gcnmix)
MixHop (class in cogdl.models.nn.mixhop)
MixHopLayer (class in cogdl.layers)
(class in cogdl.layers.mixhop_layer)
MLP (class in cogdl.layers.gcc_module)
(class in cogdl.models.nn.mlp)
MLPLayer (class in cogdl.models.nn.pyg_grand)
Model (class in cogdl.models.nn.mvgrl)
model_name (in module cogdl.models)
MODEL_REGISTRY (in module cogdl.models)
module
cogdl
cogdl.data
cogdl.data.batch
cogdl.data.data
cogdl.data.dataloader
cogdl.data.dataset
cogdl.data.download
cogdl.data.extract
cogdl.data.makedirs
cogdl.data.sampler
cogdl.datasets
cogdl.datasets.dgl_data
cogdl.datasets.gatne
cogdl.datasets.gcc_data
cogdl.datasets.gtn_data
cogdl.datasets.han_data
cogdl.datasets.kg_data
cogdl.datasets.matlab_matrix
cogdl.datasets.pyg
cogdl.datasets.pyg_ogb
cogdl.datasets.pyg_strategies_data
cogdl.layers
cogdl.layers.gcc_module
cogdl.layers.gpt_gnn_module
cogdl.layers.link_prediction_module
cogdl.layers.maggregator
cogdl.layers.mixhop_layer
cogdl.layers.prone_module
cogdl.layers.se_layer
cogdl.layers.srgcn_module
cogdl.layers.strategies_layers
cogdl.models
cogdl.models.base_model
cogdl.models.emb
cogdl.models.emb.complex
cogdl.models.emb.deepwalk
cogdl.models.emb.dgk
cogdl.models.emb.distmult
cogdl.models.emb.dngr
cogdl.models.emb.gatne
cogdl.models.emb.graph2vec
cogdl.models.emb.grarep
cogdl.models.emb.hin2vec
cogdl.models.emb.hope
cogdl.models.emb.knowledge_base
cogdl.models.emb.line
cogdl.models.emb.metapath2vec
cogdl.models.emb.netmf
cogdl.models.emb.netsmf
cogdl.models.emb.node2vec
cogdl.models.emb.prone
cogdl.models.emb.pte
cogdl.models.emb.rotate
cogdl.models.emb.sdne
cogdl.models.emb.spectral
cogdl.models.emb.transe
cogdl.models.nn
cogdl.models.nn.asgcn
cogdl.models.nn.compgcn
cogdl.models.nn.dgi
cogdl.models.nn.dgl_gcc
cogdl.models.nn.disengcn
cogdl.models.nn.fastgcn
cogdl.models.nn.gat
cogdl.models.nn.gcn
cogdl.models.nn.gcnii
cogdl.models.nn.graphsage
cogdl.models.nn.mixhop
cogdl.models.nn.mlp
cogdl.models.nn.mvgrl
cogdl.models.nn.patchy_san
cogdl.models.nn.pyg_cheb
cogdl.models.nn.pyg_deepergcn
cogdl.models.nn.pyg_dgcnn
cogdl.models.nn.pyg_diffpool
cogdl.models.nn.pyg_drgat
cogdl.models.nn.pyg_drgcn
cogdl.models.nn.pyg_gat
cogdl.models.nn.pyg_gcn
cogdl.models.nn.pyg_gcnmix
cogdl.models.nn.pyg_gin
cogdl.models.nn.pyg_gpt_gnn
cogdl.models.nn.pyg_grand
cogdl.models.nn.pyg_gtn
cogdl.models.nn.pyg_han
cogdl.models.nn.pyg_infograph
cogdl.models.nn.pyg_infomax
cogdl.models.nn.pyg_sortpool
cogdl.models.nn.pyg_srgcn
cogdl.models.nn.pyg_stpgnn
cogdl.models.nn.pyg_unet
cogdl.models.nn.pyg_unsup_graphsage
cogdl.models.nn.rgcn
cogdl.models.supervised_model
cogdl.options
cogdl.tasks
cogdl.tasks.base_task
cogdl.tasks.graph_classification
cogdl.tasks.heterogeneous_node_classification
cogdl.tasks.link_prediction
cogdl.tasks.multiplex_link_prediction
cogdl.tasks.multiplex_node_classification
cogdl.tasks.node_classification
cogdl.tasks.node_classification_sampling
cogdl.tasks.pretrain
cogdl.tasks.unsupervised_graph_classification
cogdl.tasks.unsupervised_node_classification
cogdl.trainers
cogdl.trainers.base_trainer
cogdl.trainers.deepergcn_trainer
cogdl.trainers.gpt_gnn_trainer
cogdl.trainers.sampled_trainer
cogdl.trainers.supervised_trainer
cogdl.trainers.unsupervised_trainer
cogdl.utils
MoleculeDataset (class in cogdl.datasets.pyg_strategies_data)
MRWSampler (class in cogdl.data.sampler)
mul_edge_softmax() (in module cogdl.utils)
MultiplexLinkPrediction (class in cogdl.tasks.multiplex_link_prediction)
MultiplexNodeClassification (class in cogdl.tasks.multiplex_node_classification)
MUTAGDataset (class in cogdl.datasets.dgl_data)
(class in cogdl.datasets.pyg)
MVGRL (class in cogdl.models.nn.mvgrl)
N
NCT109Dataset (class in cogdl.datasets.pyg)
NCT1Dataset (class in cogdl.datasets.pyg)
ndcg_at_k() (in module cogdl.layers.gpt_gnn_module)
neg_sample() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
NegativeEdge (class in cogdl.datasets.pyg_strategies_data)
NetMF (class in cogdl.models.emb.netmf)
NetSMF (class in cogdl.models.emb.netsmf)
Node2vec (class in cogdl.models.emb.node2vec)
node_classification_sample() (in module cogdl.trainers.gpt_gnn_trainer)
node_degree_as_feature() (in module cogdl.tasks.graph_classification)
node_feature (cogdl.layers.gpt_gnn_module.Graph attribute)
node_selection_with_1d_wl() (in module cogdl.models.nn.patchy_san)
NodeAdaptiveEncoder (class in cogdl.layers.prone_module)
(class in cogdl.models.nn.pyg_srgcn)
NodeAttention (class in cogdl.layers.srgcn_module)
NodeClassification (class in cogdl.tasks.node_classification)
NodeClassificationDataset (class in cogdl.models.nn.dgl_gcc)
NodeClassificationSampling (class in cogdl.tasks.node_classification_sampling)
NodeSampler (class in cogdl.data.sampler)
norm() (cogdl.layers.maggregator.MeanAggregator static method)
(cogdl.layers.MeanAggregator static method)
(cogdl.models.nn.pyg_gtn.GTN method)
normalization() (cogdl.models.nn.pyg_gtn.GTN method)
normalize() (in module cogdl.layers.gpt_gnn_module)
normalize_adj() (cogdl.models.nn.pyg_grand.Grand method)
(in module cogdl.models.nn.dgi)
(in module cogdl.models.nn.mvgrl)
normalize_feature() (in module cogdl.datasets.pyg)
normalize_x() (cogdl.models.nn.pyg_grand.Grand method)
NormIdentity (class in cogdl.layers.srgcn_module)
NSLoss (class in cogdl.models.emb.gatne)
num_edges() (cogdl.data.Data property)
(cogdl.data.data.Data property)
num_entities() (cogdl.datasets.kg_data.KnowledgeGraphDataset property)
num_features() (cogdl.data.Data property)
(cogdl.data.data.Data property)
(cogdl.data.Dataset property)
(cogdl.data.dataset.Dataset property)
(cogdl.datasets.Dataset property)
num_graphs() (cogdl.data.Batch property)
(cogdl.data.batch.Batch property)
(cogdl.datasets.pyg_strategies_data.BatchAE property)
(cogdl.datasets.pyg_strategies_data.BatchFinetune property)
(cogdl.datasets.pyg_strategies_data.BatchMasking property)
(cogdl.datasets.pyg_strategies_data.BatchSubstructContext property)
num_nodes() (cogdl.data.Data property)
(cogdl.data.data.Data property)
num_relations() (cogdl.datasets.kg_data.KnowledgeGraphDataset property)
nx_to_graph_data_obj() (in module cogdl.datasets.pyg_strategies_data)
nx_to_graph_data_obj_simple() (in module cogdl.datasets.pyg_strategies_data)
O
OGBArxivDataset (class in cogdl.datasets.pyg_ogb)
OGBCodeDataset (class in cogdl.datasets.pyg_ogb)
OGBGDataset (class in cogdl.datasets.pyg_ogb)
OGBMolbaceDataset (class in cogdl.datasets.pyg_ogb)
OGBMolhivDataset (class in cogdl.datasets.pyg_ogb)
OGBMolpcbaDataset (class in cogdl.datasets.pyg_ogb)
OGBNDataset (class in cogdl.datasets.pyg_ogb)
OGBPapers100MDataset (class in cogdl.datasets.pyg_ogb)
OGBPpaDataset (class in cogdl.datasets.pyg_ogb)
OGBProductsDataset (class in cogdl.datasets.pyg_ogb)
,
[1]
,
[2]
one_dim_wl() (in module cogdl.models.nn.patchy_san)
one_shot_iterator() (cogdl.datasets.kg_data.BidirectionalOneShotIterator static method)
P
parse_args_and_arch() (in module cogdl.options)
PatchySAN (class in cogdl.models.nn.patchy_san)
PetarVSpGAT (class in cogdl.models.nn.gat)
pool() (cogdl.layers.strategies_layers.GNNPred method)
PPIDataset (class in cogdl.datasets.matlab_matrix)
PPR (class in cogdl.layers.prone_module)
(class in cogdl.layers.srgcn_module)
predict() (cogdl.layers.link_prediction_module.ConvELayer method)
(cogdl.layers.link_prediction_module.DistMultLayer method)
(cogdl.models.nn.compgcn.LinkPredictCompGCN method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.gat.PetarVSpGAT method)
(cogdl.models.nn.gcn.TKipfGCN method)
(cogdl.models.nn.gcnii.GCNII method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.mixhop.MixHop method)
(cogdl.models.nn.mlp.MLP method)
(cogdl.models.nn.pyg_cheb.Chebyshev method)
(cogdl.models.nn.pyg_deepergcn.DeeperGCN method)
(cogdl.models.nn.pyg_drgat.DrGAT method)
(cogdl.models.nn.pyg_drgcn.DrGCN method)
(cogdl.models.nn.pyg_gat.GAT method)
(cogdl.models.nn.pyg_gcn.GCN method)
(cogdl.models.nn.pyg_gcnmix.GCNMix method)
(cogdl.models.nn.pyg_gpt_gnn.GPT_GNN method)
(cogdl.models.nn.pyg_grand.Grand method)
(cogdl.models.nn.pyg_infomax.Infomax method)
(cogdl.models.nn.pyg_srgcn.SRGCN method)
(cogdl.models.nn.pyg_unet.UNet method)
(cogdl.models.nn.rgcn.LinkPredictRGCN method)
(cogdl.models.supervised_model.SupervisedHomogeneousNodeClassificationModel method)
(cogdl.tasks.unsupervised_node_classification.TopKRanker method)
(cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
(cogdl.trainers.supervised_trainer.SupervisedTrainer method)
predict_noise() (cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
prepare_data() (in module cogdl.trainers.gpt_gnn_trainer)
preprocess_dataset() (in module cogdl.layers.gpt_gnn_module)
preprocess_features() (in module cogdl.models.nn.dgi)
(in module cogdl.models.nn.mvgrl)
Pretrainer (class in cogdl.layers.strategies_layers)
PretrainTask (class in cogdl.tasks.pretrain)
print_result() (in module cogdl.utils)
process() (cogdl.data.Dataset method)
(cogdl.data.dataset.Dataset method)
(cogdl.datasets.Dataset method)
(cogdl.datasets.gatne.GatneDataset method)
(cogdl.datasets.gcc_data.Edgelist method)
(cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
(cogdl.datasets.kg_data.KnowledgeGraphDataset method)
(cogdl.datasets.matlab_matrix.MatlabMatrix method)
(cogdl.datasets.pyg_strategies_data.BACEDataset method)
(cogdl.datasets.pyg_strategies_data.BBBPDataset method)
(cogdl.datasets.pyg_strategies_data.BioDataset method)
(cogdl.datasets.pyg_strategies_data.MoleculeDataset method)
processed_file_names() (cogdl.data.Dataset property)
(cogdl.data.dataset.Dataset property)
(cogdl.datasets.Dataset property)
(cogdl.datasets.gatne.GatneDataset property)
(cogdl.datasets.gcc_data.Edgelist property)
(cogdl.datasets.gtn_data.GTNDataset property)
(cogdl.datasets.han_data.HANDataset property)
(cogdl.datasets.kg_data.KnowledgeGraphDataset property)
(cogdl.datasets.matlab_matrix.MatlabMatrix property)
(cogdl.datasets.pyg_strategies_data.BACEDataset property)
(cogdl.datasets.pyg_strategies_data.BBBPDataset property)
(cogdl.datasets.pyg_strategies_data.BioDataset property)
(cogdl.datasets.pyg_strategies_data.MoleculeDataset property)
processed_paths() (cogdl.data.Dataset property)
(cogdl.data.dataset.Dataset property)
(cogdl.datasets.Dataset property)
ProNE (class in cogdl.layers.prone_module)
(class in cogdl.models.emb.prone)
prop() (cogdl.layers.prone_module.Gaussian method)
(cogdl.layers.prone_module.HeatKernel method)
(cogdl.layers.prone_module.HeatKernelApproximation method)
(cogdl.layers.prone_module.NodeAdaptiveEncoder static method)
(cogdl.layers.prone_module.PPR method)
(cogdl.layers.prone_module.SignalRescaling method)
prop_adjacency() (cogdl.layers.prone_module.HeatKernel method)
propagate() (in module cogdl.layers.prone_module)
ProtainsDataset (class in cogdl.datasets.dgl_data)
(class in cogdl.datasets.pyg)
PTCMRDataset (class in cogdl.datasets.pyg)
PTE (class in cogdl.models.emb.pte)
PubMedDataset (class in cogdl.datasets.pyg)
pyg (in module cogdl.datasets)
(in module cogdl.models)
(in module cogdl.tasks.unsupervised_node_classification)
Q
QM9Dataset (class in cogdl.datasets.pyg)
R
rand_prop() (cogdl.models.nn.pyg_grand.Grand method)
randint() (in module cogdl.layers.gpt_gnn_module)
random_partition_graph() (in module cogdl.trainers.deepergcn_trainer)
random_surfing() (cogdl.models.emb.dngr.DNGR method)
randomly_choose_false_edges() (in module cogdl.tasks.link_prediction)
raw_file_names() (cogdl.data.Dataset property)
(cogdl.data.dataset.Dataset property)
(cogdl.datasets.Dataset property)
(cogdl.datasets.gatne.GatneDataset property)
(cogdl.datasets.gcc_data.Edgelist property)
(cogdl.datasets.gtn_data.GTNDataset property)
(cogdl.datasets.han_data.HANDataset property)
(cogdl.datasets.kg_data.KnowledgeGraphDataset property)
(cogdl.datasets.matlab_matrix.MatlabMatrix property)
(cogdl.datasets.pyg_strategies_data.BACEDataset property)
(cogdl.datasets.pyg_strategies_data.BBBPDataset property)
(cogdl.datasets.pyg_strategies_data.BioDataset property)
(cogdl.datasets.pyg_strategies_data.MoleculeDataset property)
raw_paths() (cogdl.data.Dataset property)
(cogdl.data.dataset.Dataset property)
(cogdl.datasets.Dataset property)
read_gatne_data() (in module cogdl.datasets.gatne)
read_gtn_data() (cogdl.datasets.gtn_data.GTNDataset method)
(cogdl.datasets.han_data.HANDataset method)
read_triplet_data() (in module cogdl.datasets.kg_data)
RedditBinary (class in cogdl.datasets.pyg)
RedditDataset (class in cogdl.datasets.pyg)
RedditMulti12K (class in cogdl.datasets.pyg)
RedditMulti5K (class in cogdl.datasets.pyg)
reduce_func() (cogdl.layers.gcc_module.GATLayer method)
register_dataset() (in module cogdl.datasets)
register_model() (in module cogdl.models)
register_task() (in module cogdl.tasks)
regulartion() (cogdl.models.emb.hin2vec.Hin2vec_layer method)
rel_transform() (cogdl.models.nn.compgcn.CompGCNLayer method)
RelTemporalEncoding (class in cogdl.layers.gpt_gnn_module)
remove_self_loops() (in module cogdl.utils)
reset_idxes() (in module cogdl.datasets.pyg_strategies_data)
reset_parameters() (cogdl.layers.mixhop_layer.MixHopLayer method)
(cogdl.layers.MixHopLayer method)
(cogdl.layers.strategies_layers.Discriminator method)
(cogdl.models.emb.gatne.GATNEModel method)
(cogdl.models.emb.gatne.NSLoss method)
(cogdl.models.nn.asgcn.ASGCN method)
(cogdl.models.nn.asgcn.GraphConvolution method)
(cogdl.models.nn.compgcn.BasesRelEmbLayer method)
(cogdl.models.nn.disengcn.DisenGCN method)
(cogdl.models.nn.disengcn.DisenGCNLayer method)
(cogdl.models.nn.fastgcn.GraphConvolution method)
(cogdl.models.nn.gcn.GraphConvolution method)
(cogdl.models.nn.gcnii.GCNIILayer method)
(cogdl.models.nn.pyg_diffpool.DiffPool method)
(cogdl.models.nn.pyg_grand.MLPLayer method)
(cogdl.models.nn.pyg_gtn.GTConv method)
(cogdl.models.nn.pyg_infograph.InfoGraph method)
(cogdl.models.nn.rgcn.RGCNLayer method)
RGCN (class in cogdl.models.nn.rgcn)
RGCNLayer (class in cogdl.models.nn.rgcn)
RNNModel (class in cogdl.layers.gpt_gnn_module)
RotatE (class in cogdl.models.emb.rotate)
row_normalization() (in module cogdl.utils)
RowSoftmax (class in cogdl.layers.srgcn_module)
RowUniform (class in cogdl.layers.srgcn_module)
RWGraph (class in cogdl.models.emb.gatne)
RWgraph (class in cogdl.models.emb.hin2vec)
RWSampler (class in cogdl.data.sampler)
S
SAGE (class in cogdl.models.nn.pyg_unsup_graphsage)
sage_sampler() (in module cogdl.models.nn.graphsage)
SAINTSampler (class in cogdl.data.sampler)
SAINTTrainer (class in cogdl.trainers.sampled_trainer)
sample() (cogdl.data.sampler.EdgeSampler method)
(cogdl.data.sampler.MRWSampler method)
(cogdl.data.sampler.NodeSampler method)
(cogdl.data.sampler.RWSampler method)
(cogdl.data.sampler.SAINTSampler method)
(cogdl.data.sampler.Sampler method)
sample_mask() (in module cogdl.datasets.han_data)
sample_subgraph() (in module cogdl.layers.gpt_gnn_module)
SampledTrainer (class in cogdl.trainers.sampled_trainer)
Sampler (class in cogdl.data.sampler)
sampler_from_args() (cogdl.trainers.sampled_trainer.SAINTTrainer method)
sampling() (cogdl.models.nn.asgcn.ASGCN method)
(cogdl.models.nn.fastgcn.FastGCN method)
(cogdl.models.nn.graphsage.Graphsage method)
(cogdl.models.nn.pyg_unsup_graphsage.SAGE method)
sampling_edge_uniform() (in module cogdl.layers.link_prediction_module)
save_emb() (cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
save_embedding() (cogdl.models.emb.dgk.DeepGraphKernel method)
(cogdl.models.emb.graph2vec.Graph2Vec method)
save_model() (in module cogdl.tasks.link_prediction)
scale_matrix() (cogdl.models.emb.dngr.DNGR method)
scatter_sum() (in module cogdl.models.nn.pyg_sortpool)
score() (cogdl.models.emb.complex.ComplEx method)
(cogdl.models.emb.distmult.DistMult method)
(cogdl.models.emb.knowledge_base.KGEModel method)
(cogdl.models.emb.rotate.RotatE method)
(cogdl.models.emb.transe.TransE method)
SDNE (class in cogdl.models.emb.sdne)
SDNE_layer (class in cogdl.models.emb.sdne)
SELayer (class in cogdl.layers)
(class in cogdl.layers.gcc_module)
(class in cogdl.layers.se_layer)
select_task() (in module cogdl.tasks.link_prediction)
set_adj() (cogdl.models.nn.asgcn.ASGCN method)
(cogdl.models.nn.fastgcn.FastGCN method)
set_logger() (in module cogdl.tasks.link_prediction)
set_random_seed() (in module cogdl.utils)
sharpen() (in module cogdl.models.nn.pyg_gcnmix)
SignalRescaling (class in cogdl.layers.prone_module)
simulate_walks() (cogdl.models.emb.gatne.RWGraph method)
SortPool (class in cogdl.models.nn.pyg_sortpool)
spare2dense_batch() (in module cogdl.models.nn.pyg_sortpool)
sparse_mx_to_torch_sparse_tensor() (in module cogdl.layers.gpt_gnn_module)
(in module cogdl.models.nn.dgi)
(in module cogdl.models.nn.mvgrl)
SpecialSpmm (class in cogdl.models.nn.gat)
SpecialSpmmFunction (class in cogdl.models.nn.gat)
Spectral (class in cogdl.models.emb.spectral)
SpGraphAttentionLayer (class in cogdl.models.nn.gat)
split_data() (cogdl.layers.strategies_layers.Finetuner method)
(cogdl.layers.strategies_layers.SupervisedTrainer method)
split_dataset() (cogdl.models.nn.patchy_san.PatchySAN class method)
(cogdl.models.nn.pyg_dgcnn.DGCNN class method)
(cogdl.models.nn.pyg_diffpool.DiffPool class method)
(cogdl.models.nn.pyg_gin.GIN class method)
(cogdl.models.nn.pyg_infograph.InfoGraph class method)
(cogdl.models.nn.pyg_sortpool.SortPool class method)
spmm() (in module cogdl.utils)
spmm_adj() (in module cogdl.utils)
SRGCN (class in cogdl.models.nn.pyg_srgcn)
SrgcnHead (class in cogdl.models.nn.pyg_srgcn)
SrgcnSoftmaxHead (class in cogdl.models.nn.pyg_srgcn)
stpgnn (class in cogdl.models.nn.pyg_stpgnn)
sup_forward() (cogdl.models.nn.pyg_infograph.InfoGraph method)
sup_loss() (cogdl.models.nn.pyg_infograph.InfoGraph method)
SUPEncoder (class in cogdl.models.nn.pyg_infograph)
SupervisedHeterogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedHeterogeneousNodeClassificationTrainer (class in cogdl.trainers.supervised_trainer)
SupervisedHomogeneousNodeClassificationModel (class in cogdl.models.supervised_model)
SupervisedHomogeneousNodeClassificationTrainer (class in cogdl.trainers.supervised_trainer)
SupervisedModel (class in cogdl.models.supervised_model)
SupervisedTrainer (class in cogdl.layers.strategies_layers)
(class in cogdl.trainers.supervised_trainer)
symmetric_normalization() (in module cogdl.utils)
SymmetryNorm (class in cogdl.layers.srgcn_module)
T
tabulate_results() (in module cogdl.utils)
task_name (in module cogdl.tasks)
TASK_REGISTRY (in module cogdl.tasks)
taylor() (cogdl.layers.prone_module.HeatKernelApproximation method)
test_gpu_volume() (cogdl.trainers.deepergcn_trainer.DeeperGCNTrainer method)
test_moco() (in module cogdl.models.nn.dgl_gcc)
test_start_idx() (cogdl.datasets.kg_data.KnowledgeGraphDataset property)
test_step() (cogdl.models.emb.knowledge_base.KGEModel static method)
TestBioDataset (class in cogdl.datasets.pyg_strategies_data)
TestChemDataset (class in cogdl.datasets.pyg_strategies_data)
TestDataset (class in cogdl.datasets.kg_data)
text_loss() (cogdl.layers.gpt_gnn_module.GPT_GNN method)
TKipfGCN (class in cogdl.models.nn.gcn)
to() (cogdl.data.Data method)
(cogdl.data.data.Data method)
to_data_list() (cogdl.data.Batch method)
(cogdl.data.batch.Batch method)
to_list() (in module cogdl.data.dataset)
to_torch() (in module cogdl.layers.gpt_gnn_module)
toBatchedGraph() (in module cogdl.models.nn.pyg_diffpool)
TopKRanker (class in cogdl.tasks.unsupervised_node_classification)
train() (cogdl.models.emb.deepwalk.DeepWalk method)
(cogdl.models.emb.dngr.DNGR method)
(cogdl.models.emb.gatne.GATNE method)
(cogdl.models.emb.grarep.GraRep method)
(cogdl.models.emb.hin2vec.Hin2vec method)
(cogdl.models.emb.hope.HOPE method)
(cogdl.models.emb.line.LINE method)
(cogdl.models.emb.metapath2vec.Metapath2vec method)
(cogdl.models.emb.netmf.NetMF method)
(cogdl.models.emb.netsmf.NetSMF method)
(cogdl.models.emb.node2vec.Node2vec method)
(cogdl.models.emb.prone.ProNE method)
(cogdl.models.emb.pte.PTE method)
(cogdl.models.emb.sdne.SDNE method)
(cogdl.models.emb.spectral.Spectral method)
(cogdl.models.nn.dgi.DGI method)
(cogdl.models.nn.dgi.LogRegTrainer method)
(cogdl.models.nn.dgl_gcc.GCC method)
(cogdl.models.nn.mvgrl.MVGRL method)
(cogdl.models.nn.pyg_unsup_graphsage.Graphsage method)
(cogdl.tasks.base_task.BaseTask method)
(cogdl.tasks.BaseTask method)
(cogdl.tasks.graph_classification.GraphClassification method)
(cogdl.tasks.heterogeneous_node_classification.HeterogeneousNodeClassification method)
(cogdl.tasks.link_prediction.HomoLinkPrediction method)
(cogdl.tasks.link_prediction.KGLinkPrediction method)
(cogdl.tasks.link_prediction.LinkPrediction method)
(cogdl.tasks.link_prediction.TripleLinkPrediction method)
(cogdl.tasks.multiplex_link_prediction.MultiplexLinkPrediction method)
(cogdl.tasks.multiplex_node_classification.MultiplexNodeClassification method)
(cogdl.tasks.node_classification.NodeClassification method)
(cogdl.tasks.node_classification_sampling.NodeClassificationSampling method)
(cogdl.tasks.pretrain.PretrainTask method)
(cogdl.tasks.unsupervised_graph_classification.UnsupervisedGraphClassification method)
(cogdl.tasks.unsupervised_node_classification.UnsupervisedNodeClassification method)
train_start_idx() (cogdl.datasets.kg_data.KnowledgeGraphDataset property)
train_step() (cogdl.models.emb.knowledge_base.KGEModel static method)
TrainDataset (class in cogdl.datasets.kg_data)
TransE (class in cogdl.models.emb.transe)
TripleLinkPrediction (class in cogdl.tasks.link_prediction)
TwitterDataset (class in cogdl.datasets.gatne)
U
UNet (class in cogdl.models.nn.pyg_unet)
uniform_node_feature() (in module cogdl.tasks.graph_classification)
unsup_forward() (cogdl.models.nn.pyg_infograph.InfoGraph method)
unsup_loss() (cogdl.models.nn.pyg_infograph.InfoGraph method)
unsup_sup_loss() (cogdl.models.nn.pyg_infograph.InfoGraph method)
UnsupervisedGAT (class in cogdl.layers.gcc_module)
UnsupervisedGIN (class in cogdl.layers.gcc_module)
UnsupervisedGraphClassification (class in cogdl.tasks.unsupervised_graph_classification)
UnsupervisedMPNN (class in cogdl.layers.gcc_module)
UnsupervisedNodeClassification (class in cogdl.tasks.unsupervised_node_classification)
UnsupervisedTrainer (class in cogdl.trainers.unsupervised_trainer)
untar() (in module cogdl.datasets.gtn_data)
(in module cogdl.datasets.han_data)
update() (cogdl.layers.gpt_gnn_module.HGTConv method)
(cogdl.layers.maggregator.MeanAggregator method)
(cogdl.layers.MeanAggregator method)
update_aux() (cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
update_node() (cogdl.layers.gpt_gnn_module.Graph method)
update_soft() (cogdl.models.nn.pyg_gcnmix.BaseGNNMix method)
url (cogdl.datasets.gatne.GatneDataset attribute)
(cogdl.datasets.gcc_data.Edgelist attribute)
(cogdl.datasets.kg_data.FB13SDatset attribute)
(cogdl.datasets.kg_data.KnowledgeGraphDataset attribute)
USAAirportDataset (class in cogdl.datasets.gcc_data)
V
valid_start_idx() (cogdl.datasets.kg_data.KnowledgeGraphDataset property)
W
walk() (cogdl.models.emb.gatne.RWGraph method)
weights_init() (cogdl.models.nn.dgi.Discriminator method)
(cogdl.models.nn.dgi.GCN method)
(cogdl.models.nn.dgi.LogReg method)
(cogdl.models.nn.mvgrl.Discriminator method)
WikipediaDataset (class in cogdl.datasets.matlab_matrix)
wl_iterations() (cogdl.models.emb.dgk.DeepGraphKernel static method)
(cogdl.models.emb.graph2vec.Graph2Vec static method)
WN18Datset (class in cogdl.datasets.kg_data)
WN18RRDataset (class in cogdl.datasets.kg_data)
Y
YouTubeDataset (class in cogdl.datasets.gatne)
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